Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1620 ATGAGCGAAAGTGGTAGAAATACGTCTTCATCAGAGTGGAACTTGAGAGACGAACCTGAATTTGCATCTTATGGAGTTGCCAGTAGCAATAGTTCAAAGTGGTCCAATTTGAAAAGAAATGATGAGTTAAAACCCACAATGGGATTTTCATGCGAGGAACCTGTTTCTGGACGCAAAGGTTCAAATAAGGATGATATTGCGAATACAAATTACGGAGTTTGGGATGCAACAAATGCACAAGACACTGATGGAAGTTACAACATGCAGATCTCTCCTGGGCTTGATGAGGATTATAAAAATAAGTGCAATCAATCCCTAAAAGATGGCTGCAGTAAACTATTCAGGAGTAGGAGTCGGAGCCCTCCACGTAGTTTTAGGTGGGATTCAGGTAGGGTTGGAGGATTGACACAACCATATTGTAGAGATTTTGTTGCTGGGAAATGCAGAAGAGGCAACCGATGTCGTTTCCTTCACCATGACGATCAAAATTATGGTAATAGCTGGGAAAATAGACACATATATTCTGCTCCAAATGAAAATAATAACTATTCTCGTACAATTGGAAGATCATATAATAGAACTTGCTTCCATTATGCACAAGGAAGGTGTAAAATGGGAGCATCATGCAAGTATGTGCATCATGACAATTTTGATAGAAGGCGCACAGAGAGTTGTTTAGAGCAGGGTGTTCAACATGGTACAAACCAGAATAGATTGCATGGTGAATCAACATTTTCAAGTGATATCAAGAAATCCAATTGGACTGCAAAAAATGATAGTGCCAACGTTCACACTTCCCAGACAGTAGGTGCAGACATTTGGCTTGATAATGAAAAAATGTCTCCTCCTAATTGGATTTATGATGTGAGATCTTCCATCCATATTAACCAAGAGCAAGGGCAGAGTAAGCAACAAGTTGCTCCAGGACAAGTATTGCATCAGAATGTTTCTAAAACATTCATCAAGCCAGAGCCTGTTGTTAGATTCCCGAAGCAGCGCGATCCAACATGTAATAGTAGGGAGCAAAAGAATGTTAATGCAACTGGGGGGGTGTCCCTTGCCTATTTTCCAAATAGACAACTTGTGAAGAATGAGCATCCAGTTCAGTTGAAGGGGATTCATACATTTAAATTTTCATTGGTTGAGTTCGTTAAGGAGCTTTTGAATCCAACATGGAAAGATGGTAAAATCACCAAAGAAGATTATAAAGCGATTGTGAAGAAAGTTACTGACAAAGTAATTGATACAGTGCAAGGGGCACATATTCCTCAGACACAAGAGAAAATTGATTGCTATTTATCATCATCAAAATCAAAGCTTAACAAACTTGTACAGGCATATGTGGAAAAGTTTCAGAAGGCTTAG 1365 0.3919 MSESGRNTSSSEWNLRDEPEFASYGVASSNSSKWSNLKRNDELKPTMGFSCEEPVSGRKGSNKDDIANTNYGVWDATNAQDTDGSYNMQISPGLDEDYKNKCNQSLKDGCSKLFRSRSRSPPRSFRWDSGRVGGLTQPYCRDFVAGKCRRGNRCRFLHHDDQNYGNSWENRHIYSAPNENNNYSRTIGRSYNRTCFHYAQGRCKMGASCKYVHHDNFDRRRTESCLEQGVQHGTNQNRLHGESTFSSDIKKSNWTAKNDSANVHTSQTVGADIWLDNEKMSPPNWIYDVRSSIHINQEQGQSKQQVAPGQVLHQNVSKTFIKPEPVVRFPKQRDPTCNSREQKNVNATGGVSLAYFPNRQLVKNEHPVQLKGIHTFKFSLVEFVKELLNPTWKDGKITKEDYKAIVKKVTDKVIDTVQGAHIPQTQEKIDCYLSSSKSKLNKLVQAYVEKFQKA* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1620 454 ProSiteProfiles Zinc finger C3H1-type profile. 134 161 IPR000571 GO:0046872
Gso5g1620 454 MobiDBLite consensus disorder prediction 1 20 - -
Gso5g1620 454 Gene3D Set2, Rpb1 interacting domain 362 454 IPR038190 -
Gso5g1620 454 ProSiteProfiles Zinc finger C3H1-type profile. 189 216 IPR000571 GO:0046872
Gso5g1620 454 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 223 - -
Gso5g1620 454 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 223 307 - -
Gso5g1620 454 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 370 452 - -
Gso5g1620 454 MobiDBLite consensus disorder prediction 1 16 - -
Gso5g1620 454 SMART c3hfinal6 135 160 IPR000571 GO:0046872
Gso5g1620 454 SMART c3hfinal6 190 215 IPR000571 GO:0046872
Gso5g1620 454 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 159 IPR000571 GO:0046872
Gso5g1620 454 Gene3D - 133 229 - -
Gso5g1620 454 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 370 452 - -
Gso5g1620 454 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 223 307 - -
Gso5g1620 454 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1620 Gso-Chr5 39512560 39518829 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso5g1620 zf-CCCH 0.00017 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1620 - - gmx:102670057 921.768