Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1619 ATGATGGTTGCTTCTCTCTTCTACCTTTCTCTTTCTCTTTCCCTCATCCTAACCCTCTCCTCCGCCGCGCACCACAAACCCCCCCACTCACCGTCCAAGCCACCGGCTAACCCCGCCGTGACCGCCGCCTCCCCGGCAATCGAACAAGCCTGCGCCGCGACGCTCTTCCCGCAGCAATGCGAAGCCTCTCTCTCCCAATCCCAGAACCTCCCTCCGAACCCGACCCCTCTCCAGCTCCTCCAGTCCGCCATCGCCCTCTCCTCCGATAACCTCGCCACCGCGCAGACCATGGCTAAGTCCCTCCTCGACGCCTCCGCCGACAGCCGCAACCGCACCGTCGCCGCCGCCACCTGCATCGAGATATTAGCCAATTCCCATCACCGCATTTCCCTTGCCTCCGACGCGCTCCCACGCGGCAGGACCAAGGACGCGCGTGCGTGGCTGGGCGCCGCACTCGCCTACCAGTACGACTGCTGGAACAGCCTAAAATACGCCAACGACACCCAAATGGTCGGCAAAACGATGTCGTTCATCGATAACCTCGAAATTCTCTCCAGCAACGCCCTCAGCATGGCCTTTTCCTTCGATGCCTTCGGAAACGACATCGCTTCGTGGAAGCCCCCCGCGACGGAGCGCGTCGGATTCTGGGGGACTGTGGGGTCGGGTGGGCCCGGGCCCGCGGGAGGGGTTCCGTTGAATTTGACGCCCGACGTTACGGTGTGTAAGAATGGAGGGGATGGCTGTTATAAGACGGTGCAAGAGGCCGTTAACGCCGCGCCGGATAACGGCAACCGAACGAAGAGGTTTGTGATACACATTAAAGAAGGGGTTTATCAGGAGACCGTTAGGGTTCCGTTAGCGAAGAGGAATGTGGTGTTCTTGGGGGACGGCATCGGCAAGACGGTCATCACCGGCGACGCCAACGTCGGGCAACAAGGGATGACAACTTACAACTCTGCCACCGTCGCGGTTCTTGGCGATGGATTCATGGCAAAGGATCTGACGATCGAAAACACAGCAGGTCCTGACGCTCACCAAGCAGTGGCATTCAGATTAGACAGTGATCTTTCTGTGATTGAGAATTGCGAATTCTTAGGCAATCAAGACACTCTCTATGCTCACTCACTGCGCCAATTCTACAAGTCATGCAGAATTGAGGGCAACGTGGACTTCATCTTTGGAAACGCTGCAGCAATTTTCCAAGACTGCCAAATCCTAGTTCGTCCCAGGCAAGTGAAGCCAGAGAAGGGTGAGAACAATGCTATCACAGCACATGGCAGAACAGACCCTGCACAACCCACAGGCTTTGTTTTCCAGAACTGCTTGATTAATGGCACTGAGGAATATATGACATTGTACCACAGCAAGCCTCAGGTGCATAAGAACTATTTGGGTAGGCCTTGGAAGGAGTATTCTAGAACAGTTTTCATTAATTCGTTCTTGGAGGTCCTTGTGACACCCCAGGGTTGGATGCCATGGAGTGGTGACTTTGCTCTCAAGACACTTTACTATGGGGAGTTTGAGAGCAAGGGTCCTGGCTCTTATTTGTCTCAGAGGGTGCCCTGGAGTAGCAAGATCCCTGCTGAACACGTGTTAACGTATTCAGTGCAGAATTTCATTCAAGGAAATGATTGGATTCCATCTATTGGTAGCCCATCGTCGTAA 1665 0.5489 MMVASLFYLSLSLSLILTLSSAAHHKPPHSPSKPPANPAVTAASPAIEQACAATLFPQQCEASLSQSQNLPPNPTPLQLLQSAIALSSDNLATAQTMAKSLLDASADSRNRTVAAATCIEILANSHHRISLASDALPRGRTKDARAWLGAALAYQYDCWNSLKYANDTQMVGKTMSFIDNLEILSSNALSMAFSFDAFGNDIASWKPPATERVGFWGTVGSGGPGPAGGVPLNLTPDVTVCKNGGDGCYKTVQEAVNAAPDNGNRTKRFVIHIKEGVYQETVRVPLAKRNVVFLGDGIGKTVITGDANVGQQGMTTYNSATVAVLGDGFMAKDLTIENTAGPDAHQAVAFRLDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIEGNVDFIFGNAAAIFQDCQILVRPRQVKPEKGENNAITAHGRTDPAQPTGFVFQNCLINGTEEYMTLYHSKPQVHKNYLGRPWKEYSRTVFINSFLEVLVTPQGWMPWSGDFALKTLYYGEFESKGPGSYLSQRVPWSSKIPAEHVLTYSVQNFIQGNDWIPSIGSPSS* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1619 554 SMART PMEI_2 42 191 IPR006501 GO:0004857
Gso5g1619 554 CDD PMEI-like_3 50 191 - -
Gso5g1619 554 Gene3D Invertase/pectin methylesterase inhibitor family protein 45 194 IPR035513 -
Gso5g1619 554 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 190 IPR006501 GO:0004857
Gso5g1619 554 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 13 548 - -
Gso5g1619 554 PANTHER PECTINESTERASE 13 548 - -
Gso5g1619 554 SUPERFAMILY Pectin lyase-like 236 552 IPR011050 -
Gso5g1619 554 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 191 IPR035513 -
Gso5g1619 554 Gene3D - 232 554 IPR012334 -
Gso5g1619 554 Pfam Plant invertase/pectin methylesterase inhibitor 46 191 IPR006501 GO:0004857
Gso5g1619 554 Pfam Pectinesterase 237 543 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1619 Gso-Chr5 39502015 39504624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1619 35 545 Carbohydrate Esterase AT5G09760 64.217 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1619 - - gmx:100819675 1036.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1619 5 39502015 39504624 Gso6g1277 6 12459066 12462066 PCT
Gso6g1277 6 12459066 12462066 Gso5g1619 5 39502015 39504624 PCT