Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1611 ATGTTTGTTCGCGTTTCCGTTTCAAGTGTTTGCGAGAGAATGGAGTTCCTGGACGAGGACGCAAGGCCAAGGTTCGTGTTCCAGTCCGGTGCAGCTGCGAGGAGCAGCGAGCCACCGCACCCGATCCACAAACCTACCAAGCCATTCCTCTTCGCCACCGTTTCCCTCTCCTCACTCTTCCTCACTCTCTCCCTCTTCTTCCTCGAAGCGGAGCCCTTCAAATCGCTCCTCTTCTGGCTCGCACTCTCTCTCCTCGTTGGCCCCTTCGCCCCTCCCTCCATCACTGGCGGCGACGTCCGCGTCGGCCGCGGCGAGGTCGTCAACTTCCCCGATCCGGAGCCCGAGCCCGACGAGGACGCCAGTAGGAAGTCCTCACAACGGCGATCCAGACAGCGGAGGGCCGAGGAAGCCGCCGCCGTAGGCCCGGTGGTTTCCGTCAGCGCGGCGGAGAAGAGAAAAGAATCTTCTGGAATCGAGAAGCGTGCGACGGTGGTGGAGGAGGAGAAGGGGTGGAGCGAGGAGGATGTGGAGGTGCTGAAGAAGCAGATGGTGAAGAATCCGGTGGGGAAGCCAGGGAGGTGGGAGGCGATAGCGGCGGCGTTCGGGGGGAGGCACGGAGTGGACAGTGTGATAAAGAAAGCGAAGGAATTGGGAGAGAAGAGAGTGGATGATTCGGAGTCGTATGCGTTGTTTTTGAAGAAGAGGAAAGCGTTGGATAAGAGGGTTGTGGAGGAGAATGCGGATGAGGGTGAGAAAGTTGTTGATAATGGTTGGAGTTCTGCTGAGGATATCGCGTTGCTGAATGCTTTGAAAGCGTTTCCTAAGGAAGTTTCCATGAGGTGGGAAAAGGTTGCTGCTGCGGTTCCCGGGAGATCCAAGGCTGCTTGCATTAAAAGATTCGCCGAATTGAAGAAAGGGTTTCGGACTGCAAAAGCTGCAGCCGAGTGA 948 0.5738 MFVRVSVSSVCERMEFLDEDARPRFVFQSGAAARSSEPPHPIHKPTKPFLFATVSLSSLFLTLSLFFLEAEPFKSLLFWLALSLLVGPFAPPSITGGDVRVGRGEVVNFPDPEPEPDEDASRKSSQRRSRQRRAEEAAAVGPVVSVSAAEKRKESSGIEKRATVVEEEKGWSEEDVEVLKKQMVKNPVGKPGRWEAIAAAFGGRHGVDSVIKKAKELGEKRVDDSESYALFLKKRKALDKRVVEENADEGEKVVDNGWSSAEDIALLNALKAFPKEVSMRWEKVAAAVPGRSKAACIKRFAELKKGFRTAKAAAE* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1611 315 ProSiteProfiles Myb-like domain profile. 250 304 IPR001005 -
Gso5g1611 315 PANTHER TRANSCRIPTION FACTOR MAMYB 14 315 - -
Gso5g1611 315 SUPERFAMILY Homeodomain-like 254 304 IPR009057 -
Gso5g1611 315 Gene3D - 253 315 - -
Gso5g1611 315 MobiDBLite consensus disorder prediction 115 135 - -
Gso5g1611 315 MobiDBLite consensus disorder prediction 105 141 - -
Gso5g1611 315 SMART sant 167 220 IPR001005 -
Gso5g1611 315 SMART sant 254 306 IPR001005 -
Gso5g1611 315 CDD SANT 258 304 IPR001005 -
Gso5g1611 315 Gene3D - 165 223 - -
Gso5g1611 315 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 14 315 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Gso5g1611 315 SUPERFAMILY Homeodomain-like 169 208 IPR009057 -
Gso5g1611 315 Pfam Myb-like DNA-binding domain 258 303 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1611 Gso-Chr5 39398890 39400100 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso5g1611 Myb_DNA-binding 6.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1611 - - gsj:114413206 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1611 5 39398890 39400100 Gso8g1233 8 11289283 11290030 GST