Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1608 ATGTATGCCTCAAGTTCCTTTACTTCACAACTAGTCCATGACCTTCTCGTGGACACAAACTCAAGAAAGCTACTCCTTCAAGATCCACTTCTTCACCAATCAATGAACTCGGCCAACTCCCCAGATTCCATGAGTTACAACACAACAGACTCATACTTCACAGGTCGTGATTTCGATGCAAATGTTGTCATGATACTCTCAGTGCTGTTATGTGCTGTTATTTGCTCACTCGGGTTGAACTCCATCATAAAGTGTGTCTTGAGGTGTTCAAACATAGTCATCAATAATAATGACCCTTCTTCTTCTTCAAGTAGTGCGAGCTACAACCCTTCACCAAGATTGGCCAACAGAGGAATCAAGAAGAAAGCCCTCAAGACTTTTCCTACTGTGAGCTACTCAACAGAGATGAAACTCCCCGGTTTGGACACAGAGTGTGTGATATGCCTCTCGGAGTTTGCCAATGGTGATAAGGTTCGCATTTTGCCAAAGTGCAACCATGGTTTCCACGTTTGCTGCATTGACAAGTGGCTAAGTTCACACTCATCATGCCCCAAGTGCAGACAGTGCCTCATTGAGACTTGCAAGAAAATTGTTGGATCCCAAATACAACCAGTGGCACCAGTGCCAGAAACAATTATAAGGATTCAACCACTAGAACCTGAAGGTTTGGAGCGTAACTATAGGGAAGTATGCTAG 696 0.4397 MYASSSFTSQLVHDLLVDTNSRKLLLQDPLLHQSMNSANSPDSMSYNTTDSYFTGRDFDANVVMILSVLLCAVICSLGLNSIIKCVLRCSNIVINNNDPSSSSSSASYNPSPRLANRGIKKKALKTFPTVSYSTEMKLPGLDTECVICLSEFANGDKVRILPKCNHGFHVCCIDKWLSSHSSCPKCRQCLIETCKKIVGSQIQPVAPVPETIIRIQPLEPEGLERNYREVC* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1608 231 Pfam Ring finger domain 144 187 IPR001841 -
Gso5g1608 231 CDD RING-H2_PA-TM-RING 144 187 - -
Gso5g1608 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 191 IPR013083 -
Gso5g1608 231 PANTHER RING-H2 FINGER PROTEIN ATL78 1 231 IPR044602 GO:0016567|GO:0016740
Gso5g1608 231 SUPERFAMILY RING/U-box 123 192 - -
Gso5g1608 231 SMART ring_2 145 186 IPR001841 -
Gso5g1608 231 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 231 - -
Gso5g1608 231 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1608 Gso-Chr5 39367774 39368881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1608 25 191 C3H Transcription Factor Family AT3G10910 45.882 6.78e-42 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1608 K19040 - gmx:100780127 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1608 5 39367774 39368881 Gso5g1608 5 39367774 39368881 ECH
Gso5g1608 5 39367774 39368881 Gso8g1230 8 11255954 11256909 GST
Gso5g1608 5 39367774 39368881 Gso4g1808 4 48309410 48310453 PCT
Gso5g1608 5 39367774 39368881 Gso6g1267 6 12357099 12358304 PCT
Gso4g1808 4 48309410 48310453 Gso5g1608 5 39367774 39368881 PCT
Gso6g1267 6 12357099 12358304 Gso5g1608 5 39367774 39368881 PCT