Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1599 ATGGATTCGGAGGATTTCCGATCCATTCTGGAGAGTGCCGGCGTCGACGTTTGGGCCTTCATGGACGCCGCCATCGCGGTGGCTTCCGTCGACCACCCCGACGAGTTAAAGCGCCGGAGAGACAGAATCGTGGAGCGCCTTTACGCGAGTTCGGCGCTGCCGCAGTGTCGGAACTGTGACCCCGACGCCGGTGAAATCAGGACGCAGAGCAGTCCCTCCGCGGAGGAGGAAAAGGACCCCTACGGAGGCTTGCTGGACGAGGAGCAGAAGAAGATTCTATACATTAAAGAGCAACTGGAAGACCCTCACCAGTCCGAAGATTCGTTAGTGGAGTTGTTGCAGAATCTAGCAGACATGGATATCACATTCCCAGCGTTAGAGGAGTCTGACATTGGGAGGTATGTGAATCGGTTGCGGAAGCATTCGTCTAATGATGTCAAGAGATTGGTCAAGTTACTCGTCAGGAAGTGGAAGGAAATTGTAGATGAATGGGTGAAGTTGAAGTCCCCGGGATACCCGGGTACTGCTGTCATGGCTGATGAGGACTCGCCTCAGCAGAGAATCCTACAAAATGGGCACCGTCAGATTCCTGATTTTGCATACTCGCCAAATCCACACAATGGGAGTTCTGGGTCATCACAGCGCAACAATATTGAAGCAGAACGAAAACCAAAAGCAATTCCTCGCAAAGAAGCTCCCCCAAAACCATCGCCATCAGTCACTACTCCTGCTTCTCCTCCTCAAAACAGACAGAGAGAAGGCAATTTTGACCCGGATAGATTTGCTTCAGCGAGAAAACGGCTTCAAGAGAACTACAAAGAGGCTGCAAATGCCAAAAAGCAAAGAACGATTCAAGTGATGGATCTCCATGAGTTACCGAAACCCAAGAATGCCTTCCTTGGAAAAAACAAAGGCGGCACTGGTCAGGGAAGGCACTGGTGA 942 0.5127 MDSEDFRSILESAGVDVWAFMDAAIAVASVDHPDELKRRRDRIVERLYASSALPQCRNCDPDAGEIRTQSSPSAEEEKDPYGGLLDEEQKKILYIKEQLEDPHQSEDSLVELLQNLADMDITFPALEESDIGRYVNRLRKHSSNDVKRLVKLLVRKWKEIVDEWVKLKSPGYPGTAVMADEDSPQQRILQNGHRQIPDFAYSPNPHNGSSGSSQRNNIEAERKPKAIPRKEAPPKPSPSVTTPASPPQNRQREGNFDPDRFASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKNAFLGKNKGGTGQGRHW* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1599 313 MobiDBLite consensus disorder prediction 294 313 - -
Gso5g1599 313 MobiDBLite consensus disorder prediction 59 82 - -
Gso5g1599 313 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 313 - -
Gso5g1599 313 Pfam TFIIS helical bundle-like domain 112 161 IPR017923 -
Gso5g1599 313 CDD TFIIS_I 89 162 - -
Gso5g1599 313 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 85 171 IPR035441 -
Gso5g1599 313 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 89 171 IPR035441 -
Gso5g1599 313 Coils Coil 261 285 - -
Gso5g1599 313 SMART TFS2_5 92 163 IPR003617 GO:0005634
Gso5g1599 313 MobiDBLite consensus disorder prediction 196 284 - -
Gso5g1599 313 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 313 IPR044790 -
Gso5g1599 313 MobiDBLite consensus disorder prediction 202 217 - -
Gso5g1599 313 MobiDBLite consensus disorder prediction 253 277 - -
Gso5g1599 313 ProSiteProfiles TFIIS N-terminal domain profile. 87 164 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1599 Gso-Chr5 39298695 39301516 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Gso5g1599 Med26 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1599 - - gmx:100820221 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1599 5 39298695 39301516 Gso8g1224 8 11206050 11208824 GST
Gso5g1599 5 39298695 39301516 Gso4g1815 4 48385895 48389105 PCT
Gso5g1599 5 39298695 39301516 Gso6g1259 6 12272574 12275281 PCT
Gso4g1815 4 48385895 48389105 Gso5g1599 5 39298695 39301516 PCT
Gso6g1259 6 12272574 12275281 Gso5g1599 5 39298695 39301516 PCT