Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1598 ATGGCTAAATCTCCAGAAACTGAACTTCCCGTCGAAGCTTTCGGTTGGGCTGCTTCAGACACTTCTGGCACCCTTGCACCTTTTCATTTCTCCAGAAGAGAAAATGGCGTTGATGACGTCACTCTCAAGATTCTCTTCTGCGGGGTTTGCCACTCGGATCTCCACACTCTCAAAAACGACTGGGGTTTCACCACTTACCCTGTCGTTCCTGGGCATGAAATTGTTGGTGTTGTGACAAAAGTTGGCAACAATGTGAAAAACTTCAAAGTGGGTGATAAAGTTGGAGTTGGTGTGATAGTGGAGTCTTGCAAGGAATGTGAAAGTTGCCAACAAGATCTGGAGAGTTACTGTCCCCGCCCTGTTTTTACCTATAACTCTCCTTATTATGATGGGACACGAACCAAAGGTGGTTATTCTAACATCATGGTTGTGCACCAGCGTTATGTGCTCCGATTTCCTGAGAACTTGCCTCTTGATGCTGGTGCTCCTCTGCTGTGTGCTGGGATAACTGTGTATAGCCCGATGAAATATTATGGGATGACAGAGCCAGGCAAACATTTGGGAGTGGCAGGGCTTGGTGGGTTAGGTCATGTTGCAATCAAACTTGCTAAGGCGTTTGGGCTGAAAGTTACTGTCATCAGTAGCTCTCCTAACAAGCAAGCTGAGGCCATTGACCGACTCGGGGCTGATTCTTTCCTTGTTTCATCAGACCCTGCAAAAATGAAGGTGGCTTTGGGAACCATGGACTATATCATAGACACAATTTCTGCTGTTCATTCCCTGATTCCACTGCTTGGTCTGCTGAAGCTGAATGGGAAGCTAGTTACTGTAGGGTTGCCTAACAAGCCCCTTGAGCTTCCTATCTTTCCATTAGTTGCAGGACGGAAACTTATAGGGGGGAGCAACTTTGGAGGGATCAAAGAAACTCAGGAAATGCTTGATTTCTGCGCAAAGCACAACATAACTGCAGATATTGAGCTGATTAAGATGGATCAGATCAACACAGCCATGGAAAGGCTTAGCAAAGCTGATGTGAAATATCGCTTTGTGATTGATGTGGCGAACTCTTTCGCAAGTTTGTAG 1083 0.4608 MAKSPETELPVEAFGWAASDTSGTLAPFHFSRRENGVDDVTLKILFCGVCHSDLHTLKNDWGFTTYPVVPGHEIVGVVTKVGNNVKNFKVGDKVGVGVIVESCKECESCQQDLESYCPRPVFTYNSPYYDGTRTKGGYSNIMVVHQRYVLRFPENLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAIKLAKAFGLKVTVISSSPNKQAEAIDRLGADSFLVSSDPAKMKVALGTMDYIIDTISAVHSLIPLLGLLKLNGKLVTVGLPNKPLELPIFPLVAGRKLIGGSNFGGIKETQEMLDFCAKHNITADIELIKMDQINTAMERLSKADVKYRFVIDVANSFASL* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1598 360 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Gso5g1598 360 Gene3D - 16 353 - -
Gso5g1598 360 Pfam Alcohol dehydrogenase GroES-like domain 38 150 IPR013154 -
Gso5g1598 360 Gene3D - 167 323 - -
Gso5g1598 360 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED 12 357 - -
Gso5g1598 360 PANTHER ALDEHYDE REDUCTASE 12 357 - -
Gso5g1598 360 SUPERFAMILY GroES-like 22 185 IPR011032 -
Gso5g1598 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
Gso5g1598 360 CDD CAD1 14 352 - -
Gso5g1598 360 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Gso5g1598 360 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1598 Gso-Chr5 39287920 39292235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1598 12 357 Monolignol Biosynthesis Gene Families AT2G21730 71.839 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1598 K00083 - gmx:100819684 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1598 5 39287920 39292235 Gso8g1223 8 11194155 11197562 GST