Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1595 ATGGACTTCGACGAGTACGAATACCTGGAGAAGACAGTGGAGGAAGACATAGATAAAGACTCCTCCAAGAAGAAGAAGGACATCACCGACAAGAGCGAGAGGAGTTACCGGAAGCCCCGCGACGTCGACGACGATCTCGACGCCGATGACAGAAAGAGCAAGAGGTCAAGGGGCGACGACGAGAACGGTGGTTCCAAGAAAGATCGCGACAGAGACAGAGAAAGAGACCGTGACCGCGAACGTTCCTCCGGCCGTCACAGGAGCGAGAGGGAGAGAGACGGAGAGAGGAAAGACAGGGATAAGGATAGAGAGAGGAGGGATAAGGATAAGGATAAGGATAGGGATAGGGATAGGGATAGGAGAGACCGTGATAGGGACGGAGATAGGGAAAAGGAGCGCGAGAGAAGAGACAAGGATAAGGAGAGAGAGGGGGAAAAAGAGGCGAGGGAGAGATCCACAAGGAGCAGGAGTCGCTCCGAGAGGGACAGAGACAGGGAGCGAGATTTCGAAATGCGCGATGGCCGGAGATTTAGGGTTAAGAAAGAGGCCTCAGAACCTGAGGCTGACCCAGAAAGGGATCAGAGAACTGTTTTTGCCTACCAGATGCCGTTAAAAGCAACAGAGAGAGATGTGTATGAGTTCTTTTCAAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTGCCAATGGCTATTGCTCTCTCTGGCCAACTTCTTCTTGGGCAACCTGTAATGGTGAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAATCTAATGCTTCTGGTGGAGCGGCCGGTGTAGCTGGGCCCTATGGAGCTGTGGACAGAAAATTGTATGTGGGAAATCTTCACTTCAACATGACTGAGAGTCAGCTGCGGGAGATTTTTGAACCATTTGGTCCGGTTGAGGTTGTCCAACTGCCTCTTGATTTGGAAACAGGACACTGCAAGGGTTTTGGGTTTGTTCAATTTACTCATCTAGAACATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTTTCATGTGTAACAGATCATGTTGCAAGCCAAGATGCAACTGCAAAATCTGCAGACTTGGATGACGATGAAGGTGGATTGACTTTAAATGCTCACTCAAGAGCATTGCTTATGCAGAGGCTGGCTGGCGCAGACCCTGCAAGCATAGGTTTGCCTGTTGTGAATGGCTCAGTTCCTGCTCAGCAGGCTATCAGCTTGCCTATTGGTGCACCAGTTCTACCAACGCTAGTCATGCCTAATCCAGTGGTAGAACCTGTAGGAAACCCCAGCGAGTGTTTACTTTTAAAGAATATGTTTGATCCGAGCACTGAGACGGAACCAGATTTTGATATAGACATTAAAGAGGACGTAGAGGAAGAGTGTTCTAAATATGGCCGAGTGAAGCATATTTTTGTTGACAAAAAAAGTGCAGGTTTTGTGTATTTGCGGTTTGATACAGTGGAAGCAGCAAGTGCTGCTCAACATGCAATGCACTTGAGATGGTTTGCACGCAGCAACCAGAGTTGTACGAAGCCAAGTTTAAAGGGGAAGTTTGAAGTTCATACATGCCTCGAGGCTCCTGAAGATACAATATGCATTATTTTGTGGTCTTAG 1701 0.4774 MDFDEYEYLEKTVEEDIDKDSSKKKKDITDKSERSYRKPRDVDDDLDADDRKSKRSRGDDENGGSKKDRDRDRERDRDRERSSGRHRSERERDGERKDRDKDRERRDKDKDKDRDRDRDRRDRDRDGDREKERERRDKDKEREGEKEARERSTRSRSRSERDRDRERDFEMRDGRRFRVKKEASEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASGGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFVQFTHLEHAKAAQSLNGKLEIAGRTIKVSCVTDHVASQDATAKSADLDDDEGGLTLNAHSRALLMQRLAGADPASIGLPVVNGSVPAQQAISLPIGAPVLPTLVMPNPVVEPVGNPSECLLLKNMFDPSTETEPDFDIDIKEDVEEECSKYGRVKHIFVDKKSAGFVYLRFDTVEAASAAQHAMHLRWFARSNQSCTKPSLKGKFEVHTCLEAPEDTICIILWS* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1595 566 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 375 IPR000504 GO:0003723
Gso5g1595 566 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 369 IPR000504 GO:0003723
Gso5g1595 566 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 264 IPR000504 GO:0003723
Gso5g1595 566 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 483 529 IPR000504 GO:0003723
Gso5g1595 566 SUPERFAMILY RNA-binding domain, RBD 296 374 IPR035979 GO:0003676
Gso5g1595 566 Gene3D - 118 280 IPR012677 -
Gso5g1595 566 CDD RRM2_RBM23_RBM39 299 371 - -
Gso5g1595 566 Gene3D - 293 389 IPR012677 -
Gso5g1595 566 SUPERFAMILY RNA-binding domain, RBD 188 283 IPR035979 GO:0003676
Gso5g1595 566 SMART rrm1_1 461 535 IPR000504 GO:0003723
Gso5g1595 566 SMART rrm1_1 196 268 IPR000504 GO:0003723
Gso5g1595 566 SMART rrm1_1 298 371 IPR000504 GO:0003723
Gso5g1595 566 CDD RRM1_RBM39_like 196 268 - -
Gso5g1595 566 SUPERFAMILY RNA-binding domain, RBD 457 532 IPR035979 GO:0003676
Gso5g1595 566 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 390 478 IPR029123 -
Gso5g1595 566 MobiDBLite consensus disorder prediction 12 167 - -
Gso5g1595 566 CDD RRM3_RBM39_like 459 532 - -
Gso5g1595 566 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 534 - -
Gso5g1595 566 Gene3D - 456 546 IPR012677 -
Gso5g1595 566 PANTHER CC1-LIKE SPLICING FACTOR 1 534 - -
Gso5g1595 566 TIGRFAM SF-CC1: splicing factor, CC1-like family 89 534 IPR006509 GO:0003723|GO:0005634|GO:0006397
Gso5g1595 566 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 272 IPR000504 GO:0003723
Gso5g1595 566 MobiDBLite consensus disorder prediction 1 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1595 Gso-Chr5 39241147 39249194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1595 282 370 Eukaryotic Initiation Factors Gene Family AT4G34110 41.111 4.68e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1595 K13091 - gmx:100818613 805.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1595 5 39241147 39249194 Gso5g1595 5 39241147 39249194 ECH
Gso5g1595 5 39241147 39249194 Gso8g1220 8 11152317 11159954 GST
Gso5g1595 5 39241147 39249194 Gso6g1254 6 12223637 12230938 PCT
Gso6g1254 6 12223637 12230938 Gso5g1595 5 39241147 39249194 PCT