Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1593 ATGAAGAACAATAGAGATAAAGAAAAGGGTAACGACGTTGACCAGAGTTACAGACAGCATCACACGTTGTCAATGCCAATGATGTTTTCTGGTTTGAACAGAGAGAAGGAGATGTCAGCCATGATCTCTGCTTTGACACATGTGGTTTGTGGAGAAGATGAGCATCATGGTGCTGATTACTCTCTTCTTAATCACAATATTAATAATACTAATAGTGCAGTTGTTGGTGATGATGATTTTACTGTAACATCAAATATGGCTTCTGGTTCTATGCCACCTTCTTCTACTTGTTCATCTCAAGGTGGCAACTCTGTTCTCAAGAGAAGACGGGAATATGATAATACAAATGATTTCTCACGTGGAGGTTCATTCCCTGCTATTTCAACAATTGCTGAAAGTTCAAGCACGGTAACAAGAAGAACGGCGAATACAGTATACGATTACGAATACAGAACAGAGAACGTGAAAGTAGTGGAGGAAGAACCGAGGAGAAAATACAGAGGAGTGAGACAGAGGCCATGGGGAAAATGGGCTGCGGAAATAAGAGACCCTTTCAAAGCTACTAGGGTGTGGTTAGGAACATTTGAAACCGCTGAGGACGCAGCCAGAGCCTACGATCAAGCTTCATTGCGTTTCAGAGGCAACAAAGCCAAACTCAACTTCCCTGAAAACGTTAGACTCAGACAACAACAAGAACCTCCGTTGAACTTGAACCCTCCACCACCTAATCATGGGGCTATTTTGTCAATTCCTTCAACCACTGTTCACACTGAGGCTCTTCAGGGTTCACTTGGTTCAAGCAATTTTTATGAGCATTCTTATTCGCATCTTCATGAGTTTCCCGTGAGTCTCTACGATCAGATTGCAGAGTCAACATCTACTACTATGGCTTCTCATCATCTTCAATTTTTGCCGCCAGCTTCTTCCTCAACTATGACTATGACATCTCCGCAGGCACCACCTTCGATTTATCCTACGCATCCAGCGGCATGGTCTTCTGGTTATAGTTATAATAGCTCTTCTTCTGCTTCGGGGTGA 1038 0.4297 MKNNRDKEKGNDVDQSYRQHHTLSMPMMFSGLNREKEMSAMISALTHVVCGEDEHHGADYSLLNHNINNTNSAVVGDDDFTVTSNMASGSMPPSSTCSSQGGNSVLKRRREYDNTNDFSRGGSFPAISTIAESSSTVTRRTANTVYDYEYRTENVKVVEEEPRRKYRGVRQRPWGKWAAEIRDPFKATRVWLGTFETAEDAARAYDQASLRFRGNKAKLNFPENVRLRQQQEPPLNLNPPPPNHGAILSIPSTTVHTEALQGSLGSSNFYEHSYSHLHEFPVSLYDQIAESTSTTMASHHLQFLPPASSSTMTMTSPQAPPSIYPTHPAAWSSGYSYNSSSSASG* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1593 345 Gene3D AP2/ERF domain 164 224 IPR036955 GO:0003700|GO:0006355
Gso5g1593 345 PANTHER DNA-BINDING DOMAIN PROTEIN 1 338 - -
Gso5g1593 345 SUPERFAMILY DNA-binding domain 165 223 IPR016177 GO:0003677
Gso5g1593 345 PRINTS Ethylene responsive element binding protein signature 166 177 IPR001471 GO:0003700|GO:0006355
Gso5g1593 345 PRINTS Ethylene responsive element binding protein signature 188 204 IPR001471 GO:0003700|GO:0006355
Gso5g1593 345 MobiDBLite consensus disorder prediction 1 16 - -
Gso5g1593 345 CDD AP2 165 224 IPR001471 GO:0003700|GO:0006355
Gso5g1593 345 ProSiteProfiles AP2/ERF domain profile. 165 222 IPR001471 GO:0003700|GO:0006355
Gso5g1593 345 MobiDBLite consensus disorder prediction 1 22 - -
Gso5g1593 345 Pfam AP2 domain 165 214 IPR001471 GO:0003700|GO:0006355
Gso5g1593 345 SMART rav1_2 165 228 IPR001471 GO:0003700|GO:0006355
Gso5g1593 345 PANTHER DNA-BINDING DOMAIN 1 338 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1593 Gso-Chr5 39224633 39226700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1593 163 227 AP2-EREBP Transcription Factor Family AT5G61890 81.538 1.51e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso5g1593 AP2 3.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1593 - - gmx:100817546 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1593 5 39224633 39226700 Gso5g1593 5 39224633 39226700 ECH
Gso5g1593 5 39224633 39226700 Gso8g1219 8 11142885 11144681 GST