Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1577 ATGGGTCCCTTTTCACTATCCGTTATGGTTAATGACTCTGCCATTTCATTACCAGATACTTGTACGAAAAGAAAGCAGAACTTACTTCTGAAAAATTCTTTTGCATCAGTTAGCATGGGAGATGAAAAGCCATTTGACTTCCTACGCATTTTATTTGAGGGCGTTATTGCAGGAGGTACAGCTGGAGTTGTTGTTGAAACAGTTTTATACCCAATCGACACAATAAAAACACGTCTGCAGGCTGCTCGCGGAGGAGAAAAACTAATATTGAAGGGCCTTTATTCCGGATTGGCAGGGAACCTTGTTGGTGTCTTACCGGCATCTGCTTTATTTGTTGGAGTTTATGAACCTATAAAGCAGAAATTGCTGAGGGTATTTCCTGAACACCTGAGTGCTTTTACTCACTTGACTGCAGGTGCCATAGGGGGCATTGCTGCTTCATTGATTCGTGTTCCAACCGAGGTTATCAAGCAACGAATGCAAACTGGCCAGTTTACTTCAGCTTCTGGTGCTGTTCGCTTTATTGCTTCTAAGGAAGGCTTTAAAGGATTTTATGCTGGGTATGGATCTTTTTTGTTGAGGGATTTACCCTTTGATGCTATTCAATTTTGCATCTATGAGCAGATTCGAATAGGTTATATGCTTGCGGCACGAAGAAATCTGAATGATCCAGAAAATGCAATTATTGGTGCTTTTGCAGGTGCACTAACTGGAGCTATAACTACCCCCCTTGATGTCATCAAGACAAGGTTAATGGTTCAAGGATCTGCGAACCAATATAAGGGAATCGTTGACTGTGTTCAAACCATTATTAAGGAAGAAGGACCTCGTGCCTTTTTGAAAGGTATTGGTCCCAGAGTACTATGGATAGGCATAGGTGGTTCAATATTCTTTGGTGTCCTTGAGAGTACAAAACGTTTTCTTGCTGAGAGACGCCCTACACTACCCCAGAACACATACTCAGAGAAGAGCAAAGATTAA 981 0.4179 MGPFSLSVMVNDSAISLPDTCTKRKQNLLLKNSFASVSMGDEKPFDFLRILFEGVIAGGTAGVVVETVLYPIDTIKTRLQAARGGEKLILKGLYSGLAGNLVGVLPASALFVGVYEPIKQKLLRVFPEHLSAFTHLTAGAIGGIAASLIRVPTEVIKQRMQTGQFTSASGAVRFIASKEGFKGFYAGYGSFLLRDLPFDAIQFCIYEQIRIGYMLAARRNLNDPENAIIGAFAGALTGAITTPLDVIKTRLMVQGSANQYKGIVDCVQTIIKEEGPRAFLKGIGPRVLWIGIGGSIFFGVLESTKRFLAERRPTLPQNTYSEKSKD* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1577 326 PANTHER S-ADENOSYLMETHIONINE CARRIER 1, CHLOROPLASTIC/MITOCHONDRIAL 6 319 - -
Gso5g1577 326 Gene3D Mitochondrial carrier domain 52 321 IPR023395 -
Gso5g1577 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 130 212 IPR018108 -
Gso5g1577 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 225 307 IPR018108 -
Gso5g1577 326 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 6 319 - -
Gso5g1577 326 ProSiteProfiles Solute carrier (Solcar) repeat profile. 48 121 IPR018108 -
Gso5g1577 326 SUPERFAMILY Mitochondrial carrier 54 302 IPR023395 -
Gso5g1577 326 Pfam Mitochondrial carrier protein 225 310 IPR018108 -
Gso5g1577 326 Pfam Mitochondrial carrier protein 52 85 IPR018108 -
Gso5g1577 326 Pfam Mitochondrial carrier protein 129 211 IPR018108 -
Gso5g1577 326 PRINTS Mitochondrial carrier protein signature 54 67 IPR002067 GO:0055085
Gso5g1577 326 PRINTS Mitochondrial carrier protein signature 67 81 IPR002067 GO:0055085
Gso5g1577 326 PRINTS Mitochondrial carrier protein signature 185 203 IPR002067 GO:0055085
Gso5g1577 326 PRINTS Mitochondrial carrier protein signature 230 252 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1577 Gso-Chr5 39092043 39098882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1577 130 313 Chloroplast and Mitochondria Gene Families AT1G07030 31.217 1.66e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1577 K15111 - gmx:100811130 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1577 5 39092043 39098882 Gso8g1207 8 10984503 10991346 GST