Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1570 ATGGACTTCTACTTTGGAAACCCTCATCCTTATCCCAATATTCATCAATATCATGCTCATAATTCTGTAGTCAGCATGACTCCATCTTCCCCTGAGATCGCACTATCTGATTATCTCATGCTCGATGACTATGTTGATCATCAAGATTCTCGATCATCACAAAGCACTGAGTCATCAGAAAAAGCAACCTTCTGTGATCCCACTCACGGATTCAGCACTGGTGCAACCTCTAAGAACAATAACATGAAGTGCAAAAATGGGATTAATGAAAACAAAAGAGGAGTGGGTCCAAGGATCGCGTTCAGAACCAAATCAGAGCTTGAGATCATGGATGATGGATACAAGTGGAGGAAGTACGGCAAGAAGTCTGTGAAGAGCAATCCCAATCTAAGGAACTACTACAAATGTTCAAGTGGAGGATGCAGTGTGAAGAAAAGGGTGGAAAGGGATAGAGATGACTCCAGCTATGTGATAACAACTTATGAAGGTGTGCACAATCATGAGAGCCCATTTACCACATACTACAGCCCCATCTCCTTCGTACATTCTGATACTACTTTCAAATGA 567 0.4198 MDFYFGNPHPYPNIHQYHAHNSVVSMTPSSPEIALSDYLMLDDYVDHQDSRSSQSTESSEKATFCDPTHGFSTGATSKNNNMKCKNGINENKRGVGPRIAFRTKSELEIMDDGYKWRKYGKKSVKSNPNLRNYYKCSSGGCSVKKRVERDRDDSSYVITTYEGVHNHESPFTTYYSPISFVHSDTTFK* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1570 188 SUPERFAMILY WRKY DNA-binding domain 102 170 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso5g1570 188 SMART WRKY_cls 110 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso5g1570 188 Gene3D WRKY domain 97 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso5g1570 188 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 12 175 - -
Gso5g1570 188 ProSiteProfiles WRKY domain profile. 105 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso5g1570 188 Pfam WRKY DNA -binding domain 111 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso5g1570 188 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 12 175 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1570 Gso-Chr5 39044935 39048071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1570 95 178 WRKY Transcription Factor Family AT5G64810 72.619 2.76e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso5g1570 WRKY 2.7e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1570 - - gmx:100500248 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1570 5 39044935 39048071 Gso5g1570 5 39044935 39048071 ECH
Gso5g1570 5 39044935 39048071 Gso8g1201 8 10937225 10940514 GST