Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1557 ATGACAGGGAAGAGAAACCAAATTACAACAAGTCCTGTGGGAAGTCCAACATCTGGTAACATCTCAGACAGCTCCTCCTCAAAAGAACAAGACAGGTTCCTCCCTATAGCCAATGTTAGCCGAATCATGAAAAGGGCACTCCCAGCCAATGCCAAAATCTCAAAGGAAGCCAAGGAAACAGTTCAAGAGTGTGTGTCTGAGTTCATAAGCTTCATCACTGGTGAGGCCTCAGACAAGTGCCAGAGGGAAAAGAGGAAGACAATCAATGGTGATGATCTTCTTTGGGCCATGACAACACTAGGATTTGAGAACTATGTTGGACCCTTGAAGCTCTACCTGAACAACTACAGGGAAACTGAGGGAGAAAAGAGTTCTATGGCAAAACAAGAAGAACACTCTCCAACTCATCAAACCAATATTGATGGGGTGGTGGTTGAAATCAACAAGTTGCATCATTCTGTGGCAGCAACCAACAAAGCTGCAGACTTCAACACTTTCAGTGGTGGTGGCTTCTATTCTGTGGGGCCTCAAGTGGCTGCTCCAAAGAGCTTCACTGAGATTGGAGGGATCAATGGCTATAGAGAAAGTTCCATTGCTCAAAGTGCGGTCAGTGGTGATCATGATGCAAGTGGCAATAGAATGATGCCACCCAACCTACGTTATAGGGTTGAATGGTAG 678 0.4558 MTGKRNQITTSPVGSPTSGNISDSSSSKEQDRFLPIANVSRIMKRALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKLYLNNYRETEGEKSSMAKQEEHSPTHQTNIDGVVVEINKLHHSVAATNKAADFNTFSGGGFYSVGPQVAAPKSFTEIGGINGYRESSIAQSAVSGDHDASGNRMMPPNLRYRVEW* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1557 225 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 15 186 - -
Gso5g1557 225 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Gso5g1557 225 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Gso5g1557 225 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Gso5g1557 225 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 186 IPR027113 GO:0001228|GO:0006355|GO:0016602
Gso5g1557 225 MobiDBLite consensus disorder prediction 1 32 - -
Gso5g1557 225 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
Gso5g1557 225 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gso5g1557 225 Gene3D Histone, subunit A 20 142 IPR009072 GO:0046982
Gso5g1557 225 SUPERFAMILY Histone-fold 30 135 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1557 Gso-Chr5 38977102 38978524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1557 24 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 83.178 1.15e-63 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso5g1557 CBFD_NFYB_HMF 1.3e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1557 K08065 - gmx:100810059 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1557 5 38977102 38978524 Gso5g1557 5 38977102 38978524 ECH
Gso5g1557 5 38977102 38978524 Gso8g1190 8 10868101 10869514 GST