Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1551 ATGGATGCTACATCCTCACCGTTTGTTTCCTCAAGAAGAATGGGTGTATATGATCCTATCCACCAAATTAGCACGTGGGAAGAAAATTTCAAAAGTAATGATACTAATAATTTAACTGTATCCACATCCATAATTGGGGAGGTGGACATGAAGTTAGATAATCAGTTTCAGGTGCAATCAGAGGATGATACTCATGGAATATTTGGCACATCTGTGAAGTACGACCAAGACACTAACAGACTTACTGATAAGACACAACGACGTCTAGCACAAAATCGAGAGGCTGCTCGCAAGAGTCGATTGAGGAAAAAGGCATACGTGCAGCAGTTAGAATCATGTCGTTTGAAGCTCTTGCAGTTAGAGCAAGAGGTAGATCATGCAAAACAACAGGGATTGTATATTGGCAACGGATTGGGTTCTAATAATTTGGGTTTTGCTGGCTCTGTAAATTCAGGAATAACCCTTTTCAAGATGGAGTATGGAAACTGGGTGGAGGAACAAAATAGACAAATTTTGGAACTGAGAACTGCTTTAAGTTCTCATATCGGTGACATACAGCTCGGGACACTTGTACAAGGCATAATGAACCACTACACCAAACTCTTTGGCATGAAATCTGCTGCAGCAAAAGCAGATGTTTTCTATGTTATGTCTGGTATGTGGAAGACAACAGCTGAACGATTTTTCTTGTGGATTGGAGGATTTCGCCCCTCTGAACTTCTAAAGGTTCTGGTCCCTCTAAGTGAACCTTTGACAGAGCAACAACGGTTTGATGCCTATGGCCTTGAAAAATCATGCCAGCAAGCAGAAGATGCCCTTTCTCAAGGTATGGAAAAACTTCAGCAAATGCTTTCGGACTCTGTAGGACCAGGACAACTAGTTGAAGGAACCCACATTCCCCAAATGGATACTGCAATGGAGAGGCTAGAAGCTCTTGTGAGCTTTGTGAACCAGGCTGATCATCTACGACAAGAAACGTTGCGGCAAATGTATCGAATACTTACCATACGTCAGACTGGTCGATTTCTGCTTGCTTTGGGGGAATATTTTCAACGCCTGCGGGCTTTGAGCAAACTTTGGGTTAATCGTCCTCAATTTCCAGGACATGCTTAG 1113 0.4259 MDATSSPFVSSRRMGVYDPIHQISTWEENFKSNDTNNLTVSTSIIGEVDMKLDNQFQVQSEDDTHGIFGTSVKYDQDTNRLTDKTQRRLAQNREAARKSRLRKKAYVQQLESCRLKLLQLEQEVDHAKQQGLYIGNGLGSNNLGFAGSVNSGITLFKMEYGNWVEEQNRQILELRTALSSHIGDIQLGTLVQGIMNHYTKLFGMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLVPLSEPLTEQQRFDAYGLEKSCQQAEDALSQGMEKLQQMLSDSVGPGQLVEGTHIPQMDTAMERLEALVSFVNQADHLRQETLRQMYRILTIRQTGRFLLALGEYFQRLRALSKLWVNRPQFPGHA* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1551 370 Pfam Seed dormancy control 171 245 IPR025422 GO:0006351|GO:0043565
Gso5g1551 370 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 368 - -
Gso5g1551 370 Coils Coil 103 130 - -
Gso5g1551 370 Pfam bZIP transcription factor 83 116 IPR004827 GO:0003700|GO:0006355
Gso5g1551 370 ProSiteProfiles DOG1 domain profile. 153 363 IPR025422 GO:0006351|GO:0043565
Gso5g1551 370 Gene3D - 83 132 - -
Gso5g1551 370 PANTHER TRANSCRIPTION FACTOR TGA9 1 368 - -
Gso5g1551 370 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 87 102 IPR004827 GO:0003700|GO:0006355
Gso5g1551 370 SUPERFAMILY Leucine zipper domain 84 123 IPR046347 GO:0003700|GO:0006355
Gso5g1551 370 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 82 112 IPR004827 GO:0003700|GO:0006355
Gso5g1551 370 SMART brlzneu 80 140 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1551 Gso-Chr5 38932560 38940318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1551 1 367 Calmodulin-binding Proteins AT5G65210 64.595 1.31e-173 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso5g1551 DOG1 3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1551 K14431 - gmx:100808443 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1551 5 38932560 38940318 Gso5g1551 5 38932560 38940318 ECH
Gso5g1551 5 38932560 38940318 Gso8g1182 8 10810738 10817370 GST
Gso5g1551 5 38932560 38940318 Gso18g0181 18 1580131 1586039 PCT
Gso5g1551 5 38932560 38940318 Gso13g1439 13 29873797 29879602 PCT