Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1549 ATGACGGATTCTTCTCCTCTTATCCCTCCCTCACCGGTCACAGTCACCGAGATCGACCTCGAAGAGGGACCCTCCGAACAAATTCAATGCCGGATTTGTCTTGAAACTGATGGTAGAAATTTCATAGTTCCTTGTAAGTGCAAAGGTACGTCAAAGTACGTACATAGAGAGTGTTTAGATCATTGGCGAGCCGTGAAGGAAGGGTTTGCATTTGCCCATTGCACTACTTGCAAGGCTCCATACCATTTGCGTGTTCATGGTGCTTATAGACAATGGCGTACTTTCAAATTTCGGTTTTTTGTAACCCGAGACATTTTGCTTATATTTCTGGCTGTTCAGCTTGTCATTGCTTCACTTGCTTATTTGGTTTACCAAATAGATGGTTACGAGAAGTATTGGCTTCGTCTTGTTTGGGGTTTTGGTAGTGAGCTGAGCTTTTACTATATATGTGGAGCACTGGTGTTTTTTTTGTTGCTTGGCCTGTCTGGGTGCTTTATTACTTGTTCTGATCCAAGAATTCGCAGTGATTTGGGTCAGCCTTGTCGAGAAATATGTCTTTGTTGCTGTCAACCTGGAGTTTGTGCTGATCGTCATTTGCATGGTACTCCTTATATGTACGGTACTCCTTATATGTCGACTGATTGCAATGCATGCTGTGAGAATTGTGGAACTGAATGCTGTGGTTGCACTTGCATGAGAGGTTCTGAGGACGAAGCAGGGCTACCATTATTATTCATAATGGTTTTGTTTTTTCTGGTACTCTTTGCTGTACTTGGGATATTTTACAGTGTATTAGTGGCTACAATGATAGGACAACGGATATGGCAGCGTCATTATCACATACTTGCGAAAAGGATGCTAACAAAGGAGTATGTCGTTGAGAACATTGATGGAGAGATAGCAGGGCCTAATTGGACTCCTCCACCCCTCCCCCAGGAGCATGTACGGCAGCTGAAAACATTGGGCCTCCTATGA 975 0.4359 MTDSSPLIPPSPVTVTEIDLEEGPSEQIQCRICLETDGRNFIVPCKCKGTSKYVHRECLDHWRAVKEGFAFAHCTTCKAPYHLRVHGAYRQWRTFKFRFFVTRDILLIFLAVQLVIASLAYLVYQIDGYEKYWLRLVWGFGSELSFYYICGALVFFLLLGLSGCFITCSDPRIRSDLGQPCREICLCCCQPGVCADRHLHGTPYMYGTPYMSTDCNACCENCGTECCGCTCMRGSEDEAGLPLLFIMVLFFLVLFAVLGIFYSVLVATMIGQRIWQRHYHILAKRMLTKEYVVENIDGEIAGPNWTPPPLPQEHVRQLKTLGLL* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1549 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 89 IPR013083 -
Gso5g1549 324 SMART ringv_2 29 78 IPR011016 GO:0008270
Gso5g1549 324 CDD RING_CH-C4HC3_MARCH 30 78 - -
Gso5g1549 324 Pfam RING-variant domain 30 77 IPR011016 GO:0008270
Gso5g1549 324 PANTHER - 3 324 - -
Gso5g1549 324 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 3 324 - -
Gso5g1549 324 SUPERFAMILY RING/U-box 25 82 - -
Gso5g1549 324 ProSiteProfiles Zinc finger RING-CH-type profile. 22 84 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1549 Gso-Chr5 38910775 38915071 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1549 5 324 C3H Transcription Factor Family AT2G22120 72.446 4.64e-162 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1549 - - gmx:100803480 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1549 5 38910775 38915071 Gso5g1549 5 38910775 38915071 ECH
Gso5g1549 5 38910775 38915071 Gso18g0180 18 1560659 1565989 PCT
Gso5g1549 5 38910775 38915071 Gso13g1440 13 29892818 29899712 PCT