Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1548 ATGACGTCTGTGTGTGAGTTCTTGTATCAGCTTTATGCCAAGGCAATAGTTCTATTAACATACATGCTAATACAACTTATCTTCATCATCCAGTACCTTAAGTCAGATACACATCCAATTTCCACCACCCAATACCTCAATTTCATCGAAGAGAAGAACCCCACTATTCAGTTCAATAGAAGATTGAAGGCAGAACACATAGATTGCAGAGTGTGCTTATCTGAATTCCAGGAAGGGGAGAAAGTGAGGAACCTCAATTGCAGACACACATTTCACAAGGATTGCTTGGACCAGTGGTTGCAACAATACTGTGCTACTTGCCCACTTTGCAGGAACCAGGTGCTCCCAGATGATGTTGTGGCCAACTACAACCTGCTTCAGAATCAGGCAGAATATGATGGGAATGATGACCAGCTTATCTTTTTGTTATCTGCATTAAGGGGTGGTAGCACTTTGCGCAGATATCTCTGA 471 0.4246 MTSVCEFLYQLYAKAIVLLTYMLIQLIFIIQYLKSDTHPISTTQYLNFIEEKNPTIQFNRRLKAEHIDCRVCLSEFQEGEKVRNLNCRHTFHKDCLDQWLQQYCATCPLCRNQVLPDDVVANYNLLQNQAEYDGNDDQLIFLLSALRGGSTLRRYL* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1548 156 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 116 IPR013083 -
Gso5g1548 156 Pfam Ring finger domain 68 111 IPR001841 -
Gso5g1548 156 SMART ring_2 69 110 IPR001841 -
Gso5g1548 156 SUPERFAMILY RING/U-box 48 118 - -
Gso5g1548 156 CDD mRING-H2-C3H2C2D_ZSWM2 69 111 - -
Gso5g1548 156 ProSiteProfiles Zinc finger RING-type profile. 69 111 IPR001841 -
Gso5g1548 156 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 151 - -
Gso5g1548 156 PANTHER - 1 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1548 Gso-Chr5 38898790 38899610 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1548 68 121 C3H Transcription Factor Family AT1G15100 59.259 1.14e-19 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1548 K16282 - gmx:102661133 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1548 5 38898790 38899610 Gso5g1548 5 38898790 38899610 ECH
Gso5g1548 5 38898790 38899610 Gso8g1180 8 10782044 10782718 GST
Gso5g1548 5 38898790 38899610 Gso18g0178 18 1547178 1548158 PCT
Gso5g1548 5 38898790 38899610 Gso13g1442 13 29908110 29908935 PCT