Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1544 ATGGCCACCTCACTCGCTTGGAGACTCTCTGCCAACAATGGCACCACCCTTGCCGCAAATGATCTGGAAAGAAATGGTGACGGGAGGACTCAAGATTCAGAGCCCCCAACTCCACATTCTGTTATGAAAATGGGATTGAGAGAGCGTAACAGCAGCATGGAGGATCCAGATGGGACATTAGCTAGTGTTGCCCAATGCATTGAGCAGCTGCGTCAGAGCTCATCTTCTGTGCAGGAGAAAGAGTATTCCTTAAGGCAGTTATTGGAGCTTATAGATCTGCGTGAAAATGCTTTTGGTGCTGTTGGATCTCACTCTCAGGCAGTTCCAGTACTTGTTTCCCTTCTCCGGTCCGGTTCATTCAATGTGAAGATACAAGCAGCAACTGTCTTGGGTTCCCTTTGTAAAGAAAATGAGCTAAGGGTGAAGGTCTTGCTTGGAGGAAGCATTCCTCCATTGCTTGGTCTACTAAAGTCCAGTTCTACTGAAGGCCAAATTGCTGCTGCAAAGACTATTTATGCCGTCTCTCAGGGTGGTGTAAAAGATCATGTTGGTTCAAAAATTTTTTCGACTGAAGGAGTTGTACCAGTGCTCTGGGTGCAGCTGAAAACTGGCCTGAAGGCAGGAAATGTAGTTGAAGGTTTATTGACTGGTGCATTGAAAAATCTCTCCAGCAATACCGAGGGATTCTGGAATGCAACAATACAAGCTGGAGGAGTGGACATATTAGTGAAGTTACTGGCAATGGGACAGCCTAGCAGTTTAGCTAATGTGTGCAATTTACTTGCTTCTGTAATGATGGAGGATGCATCTGTTTGTTCAAAGGTGTTGACAGCGGAGGTGACAAAGCAACTTCTGAACCTATTAGGCCCAGGTAATGATGACTCTGTTAGAGCTGAAGCAGCTGGTGCTCTGAATTCTCTTTCTGCCCAGTGCAAAGAGGCACGGCGAGAGATAGCCAATGCTAATGGTATTCCTGCTTTGATCAATGCTACCATAGCTCCTTCCAAAGAATACATGCAGGGTGAGTGTGCTCAAGCATTACAGGAGAATGCTATGTGTGCTCTAGCAAACATCTCTGGGGGTTTGTCTTTTGTCATATCTAGCCTTGGCCAAAGTCTTGAATCATGCACCTCACCTACCCAAATTGCGGACACATTAGGAGCTTTGGCATCAGCTCTCATGATATATGATAACAAGGCAGAATCTACCAGAGCATCAGATCCTTTGGTTGTCGAGCAGACATTACTCAAGCAATTTAAACCTCGCTTGCCCTTCCTTGTACAGGAACGAACCATTGAAGCGCTTGCTAGTTTGTATGGAAATTCCATACTTTCAAATAAACTTGCAAATTCTGATGCAAAACATCTGCTTGTTGGTTTGATAACAATGGCCGCCAATGAAGTTCAAGACGAGCTTATAAAAGCTCTGTTGACACTGTGCAAAAGTGAAGGAAGTCTATGGCGTGCACTTCAGGGCCGTGAAGGGGTTCAGCTATTGATATCTCTTTTGGGGCTTTCATCAGAACAGCAGCAAGAGTGTGCAGTTGCCCTGCTTTGCCTTCTATCATATGAAAATGATGAAAGTAAATGGGCAATTACTGCTGCTGGTGGCATACCTCCACTTGTTCAAATTTTGGAGACAGGATCTGCAAAAGCAAAGGAAGATTCAGCTACAATCCTTAAGAACCTGTGCAATCATAGCGAAGATATACGTGCTTGCGTTGAAAGTGCTGATGCTGTTCCTGCATTGTTGTGGCTATTGAAGAATGGAAGCCCAAATGGGAAGGATATTGCAGCAAAGACTTTAAATCATTTAATACATAAATCTGATACTACAACCATTAGTCAGCTTACAGCGTTATTGACTAGTGATCTTCCTGATTCTAAGGTTTATGTCTTGGATGCTTTGAGAAGTATGCTTTCTGTTGCTCCCCTTAGTGAAATTTTACGTGAAGGTAGTGCTGCCAGTGATGCATTTGATACCATGATAATATTATTGAGCTCTACCAAAGAAGAAACTCAGGCAAAGTCTGCATCAGCTCTGGCAGGAATTTTTGAAACAAGGAAAGATGTGCGTGAAAGTAGCATTGCGGTTAAAACTCTTTTGTCAGCCATGAAATTGCTTAATGCTGAATCTGAAAGTATCCTGACTGAGTCCTCACACTGCCTGGCTGCAATATTTCTTTCCATCAAAGAGAACAGGGATGTAGCTGTTGTTGCCAGAGACACATTATCAACCCTAGTTGCACTAGCAAACTCTTCAGTTTTGGAAGTTGCAGAGATGGCCATGTGTGCTCTGGCAAACCTCATTTTGGACAGTGAGATTGCAGAGAAAGCTATTGCAGAAGAAGTTATCTTACCCGCTACTAGAATATTATGTGAAGGCACAATTTCTGGAAAAACCCATGCTGCAGCAGCAATTGCTCGTCTCCTGCATTCTCAGGATGTTGATTATGGTGTAACTGATTGTGTGAATCGTGCTGGAACTGTTCTTGCATTAGTTTCTTTCTTAGATTCTGCTGTTAATGGGTCTGTTGCCACATCAGAAGCTCTAGAAGCACTTGCCATCCTGTCAAGGTCAGAAGAGACCAGTGCAAATATTAAATCTGCTTGTGCAGTTTTGGCTGAATTCCCTAAAAGCATAAGCCCAATTGTCTTGTGCATTGTTGATTCAGAGCCAATGCTGCAGGATAAAACAATTGAGATTTTATCTCGATTATGTAAGGATCAGCCTGTTGTTTTAGGCGATACTATCGTGTCAGCACCTGGATGTATATCTTCAATAGCTAAAAGGATAATTAGTTCCACAAATGTAAAGGTCAAAATTGGGGGAGCAGCACTTCTTATTTGTACTGCAAAAGCCAATCATCAGAGACTGGTGGAGGATCTCAATTCATCAAACCTGTGTGCCAATCTTATTCGGTCTCTTGTTGATATGCTTACTTCTGCACAGCCTTCGTTGGGTTACCTGGATGGTGACAAGAAGGAATTCATTAGCATATGCAGGTACACAAGAGAAGAGGCCAACGGTTGTGAATCCAACACTAGCACCAGCATTATATGTGGTGCTGACTTGGCGATATGGTTACTGTCTATTCTTGCTTGTCATGGTGAAAAAAATAAAATTGCAATAATGGAGGCTGGAGCAATTGATGTTCTCATTGACAGGATCTCAAATTGTTTCTCACAATATTCTCAGATTGACTACAACGAAGATAGCAGCATGTGGATTCATGCTTTGTTGTTGGCAATATTATTTCAAAATAGAGATATCATACGGGCACATCCAACCATAAAATCTGTACCAGCACTTACCAGTTTATTGAAGTCAGAGGAATCAGCAAACAAATATTTTGCTGCACAATCAATAGCTAGCCTTGTCTGTAATGGTAGCCGGGGAACACTTTTGTCAGTGGCAAATTCTGGGGCAGCAGGTGGACTTATCTCTTTGCTTGGCTGTGCTGATACTGATATACAGGATCTTCTGGAATTATCAGAGGAATTTTCTTTGGTACGTTATCCTGATCAAGTGGCTCTTGAGAGGTTATTTAGAGTTGATGATATAAGAGGGGGAGCCACTTCTCGGAAGGCAATACCTGCCCTAGTTGATCTGCTCAAACCAATTCCAGATCGTCCAGGAGCACCATTTTTGGCACTTGGGCTTTTGACTCAGCTTGGTAAAGATTGTCCTTCAAATATGAGTGTAATGGTGGAGTCTGGGGCCTTAGAGGCACTTACGAAGTATCTTTCACTGAGTCCACAAGATGCAACTGAAGAAGCTGCTACAGATCTGCTAGGAATTCTGTTTAGCAGTGCTGAAATACGAAAACATGAATCAGCATATGGTGCTGTTGCTCAACTTGTAGCTGTTCTACGTTTAGGGGGAAGAGGTGCAAGGTATAGTGCTGCAAAAGCCTTGGAAAGTTTGTTTTCTGCTGACCACATTAGAAATGCAGAGATTGCTCGGCAAGCTGTTCAACCGTTGGTGGAGATTCTCAGTACAGGTTCAGAAAAGGAGCAGCATGCTGCCATTGCTGCATTGGTTGGGTTACTGAGTGAAAATCCATCAAGAGCACTTGCTGTTGCTGATGTTGAGATGAATGCAGTGGAAGTTCTTTGTAGGATCATTTCATCAAATTGTTCAATGGACTTGAAAGGGGATGCTGCCGAATTATGTTGTGCTCTTTTTGGAAATACAAGGATTCGGTCCACAGCAGCTGCTGCATGCTGTGTTGAACCACTTGTCTCTCTCCTTGTAACTGAGCTCAGTCCTGCTCAGCTTTCAGTTGTCCGGGCATTGGATAGGCTTGTTGATGATGAGCAATTGGCTGAATTAGTTGCTGCACATGGTGCAGTTGTTCCTCTTGTTGGTCTACTGTCTGGTAGGAACTATATACTTCATGAGGCTATTTCCAGGGCTCTGGTCAAGTTAGGAAAAGACAGGCCTGCATGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCGTACTTGACATCTTACATGAAGCACCTGATTATCTATGTGCAGCTTTTGCTGAATTGTTGCGTATATTGACCAATAATGCTAGCATAGCTAAAGGATCATCTGCTGCTAAAGTGGTTGAACCATTGTTTTTGTTGTTGACAAGACAGGAATTTGGGCCTGATGGACAGCACAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACATCCACAGTGCCGCGCTGACCATTCATTGACTTCTCGCCAAGTTATTGAACCACTTATCCATTTGCTTGATTCTCCAATTTCAGCAGTACAACAGTTGGCTGCTGAGCTTCTTTCACATCTACTTGTAGAAGAGCGCCTTCAGAAGGATCCAGTGACACAGCAAGCAATTGGCCCTCTCATTCGAGTTCTTGGTTCTGGTATACACATATTGCAGCAGAGAGCTGTAAAAGCCCTAGTTAGTATTGCACTAACATGGCCTAATGAAATTGCTAAAGAGGGTGGTGTTATTGAAATTTCCAAAGTTATATTGCAAGCTGACCCTTCCCTTCCTCATGCTTTATGGGAATCTGCTGCCTCGGTTTTGTCAAGTATTCTGCAGTTTAGCTCTGAATTCTACTTGGAAGTTCCTATTGCTGTACTGGTAAGGTTGCTTCGATCAGGCTCAGAGAGCACAGTTGTTGGTGCTTTAAATGCTCTTTTAGTGTTGGAAAATGATGACGGAACTAGTGCAGAAGCTATGGCTGAAAGTGGTGCTATAGAGGCTCTCTTGGAGCTCCTACGATCTCATCAGTGTGAGGAAACTGCTGCAAGACTTTTAGAAGTATTGCTGAACAATGTGAAGATTCGAGAAACGAAAGTAACAAAATCAGCTATCGTACCATTATCCCAGTATCTTTTGGACCCACAAACTCAAGCACAGCAGGCAAGGTTGTTGGCAACTTTGGCTCTTGGGGATCTGTTTCAGAATGAGGCTCTTGCTCGAACAAGTGATGCAGTTTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGAGCAACCAACAGAAGAGATGAAAGTCGTAGCCATATGTGCTTTGCAGAATCTTGTGATGTATAGTCGATCAAATAGGAGAGCAGTTGCAGAGGCTGGTGGTGTTCAGGTTGTATTGGATCTGATAGGTTCAAGTGATCCAGAAACATCAATTCAGGCGGCAATGTTTGTTAAACTTCTCTTCTCAAATAATACTATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCAATTACTGCTGCTATTGAGAAAGATTTATGGGCTTCTGGAACTGTGAATGATGAGTATCTGAAAGCCTTAAATTCTCTATTTACCAACTTCCCAAGACTTAGAGCAACTGAACCAGCAACGCTTAGCATTCCCCATCTGGTTACAGCCTTAAAGACAGGTTCAGAGGCTTGTCAGGAAGCTGCATTGGATGCACTTTTCCTGCTCAGACAAGCTTGGTCAGCATGCCCAGCTGAAGTTTCTAGAGCTCAGTCAATTGCAGCTGCAGATGCTATTCCATTGCTGCAGTACTTAATCCAGTCTGGGCCGCCTCGGTTTCAGGAGAAAGCAGAATTTTTATTGCAGTGTTTACCAGGGACATTGGTGGTGATCATCAAGCGTGGTAACAATATGAAACAGTCTGTTGGAAACCCTAGTGTTTACTGCAAGCTTACACTTGGCAACACTCCACCAAGGCAAACCCAGGTGGTTTCAACTGGCCCTAATCCAGAATGGGGTGAGAGCTTTTCATGGACCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCATATTTCTTGCAAAAATAAGAGCAAAGTGGGAAAGAGTAAATTTGGGAAAGTTACAATCCAGATTGATCGAGTGGTAATGCTTGGATCAGTAGCTGGAGAGTATGCTTTGTTGCCTCAAAGTAAAAGTGGCCCCCCGCGGAATCTAGAAATAGAATTTCAGTGGTCTAACAAATGA 6456 0.432 MATSLAWRLSANNGTTLAANDLERNGDGRTQDSEPPTPHSVMKMGLRERNSSMEDPDGTLASVAQCIEQLRQSSSSVQEKEYSLRQLLELIDLRENAFGAVGSHSQAVPVLVSLLRSGSFNVKIQAATVLGSLCKENELRVKVLLGGSIPPLLGLLKSSSTEGQIAAAKTIYAVSQGGVKDHVGSKIFSTEGVVPVLWVQLKTGLKAGNVVEGLLTGALKNLSSNTEGFWNATIQAGGVDILVKLLAMGQPSSLANVCNLLASVMMEDASVCSKVLTAEVTKQLLNLLGPGNDDSVRAEAAGALNSLSAQCKEARREIANANGIPALINATIAPSKEYMQGECAQALQENAMCALANISGGLSFVISSLGQSLESCTSPTQIADTLGALASALMIYDNKAESTRASDPLVVEQTLLKQFKPRLPFLVQERTIEALASLYGNSILSNKLANSDAKHLLVGLITMAANEVQDELIKALLTLCKSEGSLWRALQGREGVQLLISLLGLSSEQQQECAVALLCLLSYENDESKWAITAAGGIPPLVQILETGSAKAKEDSATILKNLCNHSEDIRACVESADAVPALLWLLKNGSPNGKDIAAKTLNHLIHKSDTTTISQLTALLTSDLPDSKVYVLDALRSMLSVAPLSEILREGSAASDAFDTMIILLSSTKEETQAKSASALAGIFETRKDVRESSIAVKTLLSAMKLLNAESESILTESSHCLAAIFLSIKENRDVAVVARDTLSTLVALANSSVLEVAEMAMCALANLILDSEIAEKAIAEEVILPATRILCEGTISGKTHAAAAIARLLHSQDVDYGVTDCVNRAGTVLALVSFLDSAVNGSVATSEALEALAILSRSEETSANIKSACAVLAEFPKSISPIVLCIVDSEPMLQDKTIEILSRLCKDQPVVLGDTIVSAPGCISSIAKRIISSTNVKVKIGGAALLICTAKANHQRLVEDLNSSNLCANLIRSLVDMLTSAQPSLGYLDGDKKEFISICRYTREEANGCESNTSTSIICGADLAIWLLSILACHGEKNKIAIMEAGAIDVLIDRISNCFSQYSQIDYNEDSSMWIHALLLAILFQNRDIIRAHPTIKSVPALTSLLKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGAAGGLISLLGCADTDIQDLLELSEEFSLVRYPDQVALERLFRVDDIRGGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLGKDCPSNMSVMVESGALEALTKYLSLSPQDATEEAATDLLGILFSSAEIRKHESAYGAVAQLVAVLRLGGRGARYSAAKALESLFSADHIRNAEIARQAVQPLVEILSTGSEKEQHAAIAALVGLLSENPSRALAVADVEMNAVEVLCRIISSNCSMDLKGDAAELCCALFGNTRIRSTAAAACCVEPLVSLLVTELSPAQLSVVRALDRLVDDEQLAELVAAHGAVVPLVGLLSGRNYILHEAISRALVKLGKDRPACKMEMVKAGVIESVLDILHEAPDYLCAAFAELLRILTNNASIAKGSSAAKVVEPLFLLLTRQEFGPDGQHSALQVLVNILEHPQCRADHSLTSRQVIEPLIHLLDSPISAVQQLAAELLSHLLVEERLQKDPVTQQAIGPLIRVLGSGIHILQQRAVKALVSIALTWPNEIAKEGGVIEISKVILQADPSLPHALWESAASVLSSILQFSSEFYLEVPIAVLVRLLRSGSESTVVGALNALLVLENDDGTSAEAMAESGAIEALLELLRSHQCEETAARLLEVLLNNVKIRETKVTKSAIVPLSQYLLDPQTQAQQARLLATLALGDLFQNEALARTSDAVSACRALVNVLEEQPTEEMKVVAICALQNLVMYSRSNRRAVAEAGGVQVVLDLIGSSDPETSIQAAMFVKLLFSNNTIQEYASSETVRAITAAIEKDLWASGTVNDEYLKALNSLFTNFPRLRATEPATLSIPHLVTALKTGSEACQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGNTPPRQTQVVSTGPNPEWGESFSWTFESPPKGQKLHISCKNKSKVGKSKFGKVTIQIDRVVMLGSVAGEYALLPQSKSGPPRNLEIEFQWSNK* 2152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1544 2151 Gene3D - 48 410 IPR011989 -
Gso5g1544 2151 Gene3D - 411 651 IPR011989 -
Gso5g1544 2151 Gene3D - 1523 1701 IPR011989 -
Gso5g1544 2151 Gene3D C2 domain 2028 2151 IPR035892 -
Gso5g1544 2151 SUPERFAMILY ARM repeat 55 643 IPR016024 -
Gso5g1544 2151 SMART arm_5 1229 1270 IPR000225 GO:0005515
Gso5g1544 2151 SMART arm_5 1398 1438 IPR000225 GO:0005515
Gso5g1544 2151 SMART arm_5 525 565 IPR000225 GO:0005515
Gso5g1544 2151 SMART arm_5 136 176 IPR000225 GO:0005515
Gso5g1544 2151 SMART arm_5 1312 1352 IPR000225 GO:0005515
Gso5g1544 2151 SMART arm_5 268 309 IPR000225 GO:0005515
Gso5g1544 2151 SMART arm_5 1481 1521 IPR000225 GO:0005515
Gso5g1544 2151 SMART arm_5 482 523 IPR000225 GO:0005515
Gso5g1544 2151 SMART arm_5 1730 1769 IPR000225 GO:0005515
Gso5g1544 2151 SMART arm_5 567 607 IPR000225 GO:0005515
Gso5g1544 2151 SMART arm_5 311 360 IPR000225 GO:0005515
Gso5g1544 2151 SMART arm_5 817 859 IPR000225 GO:0005515
Gso5g1544 2151 SMART arm_5 1569 1607 IPR000225 GO:0005515
Gso5g1544 2151 SMART arm_5 94 135 IPR000225 GO:0005515
Gso5g1544 2151 SMART arm_5 1184 1227 IPR000225 GO:0005515
Gso5g1544 2151 SMART arm_5 731 771 IPR000225 GO:0005515
Gso5g1544 2151 SMART arm_5 1857 1897 IPR000225 GO:0005515
Gso5g1544 2151 SMART arm_5 1439 1479 IPR000225 GO:0005515
Gso5g1544 2151 Pfam Armadillo/beta-catenin-like repeat 104 134 IPR000225 GO:0005515
Gso5g1544 2151 Pfam Armadillo/beta-catenin-like repeat 525 564 IPR000225 GO:0005515
Gso5g1544 2151 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 19 2151 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Gso5g1544 2151 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2030 2133 IPR035892 -
Gso5g1544 2151 SMART C2_3c 2031 2127 IPR000008 -
Gso5g1544 2151 SUPERFAMILY ARM repeat 661 1063 IPR016024 -
Gso5g1544 2151 SUPERFAMILY ARM repeat 1398 1657 IPR016024 -
Gso5g1544 2151 Coils Coil 297 324 - -
Gso5g1544 2151 Gene3D - 652 873 IPR011989 -
Gso5g1544 2151 Gene3D - 1817 2026 IPR011989 -
Gso5g1544 2151 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 536 578 IPR000225 GO:0005515
Gso5g1544 2151 CDD C2 2032 2122 - -
Gso5g1544 2151 Gene3D - 1366 1520 IPR011989 -
Gso5g1544 2151 Gene3D - 1702 1816 IPR011989 -
Gso5g1544 2151 Gene3D - 875 1365 IPR011989 -
Gso5g1544 2151 Pfam C2 domain 2030 2119 IPR000008 -
Gso5g1544 2151 ProSiteProfiles C2 domain profile. 2011 2128 IPR000008 -
Gso5g1544 2151 MobiDBLite consensus disorder prediction 18 42 - -
Gso5g1544 2151 SUPERFAMILY ARM repeat 1580 2025 IPR016024 -
Gso5g1544 2151 SUPERFAMILY ARM repeat 1082 1436 IPR016024 -
Gso5g1544 2151 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 19 2151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1544 Gso-Chr5 38853815 38864930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1544 496 620 U-box Gene Family AT3G46510 32.540 3.02e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1544 - - gmx:100807370 4030.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1544 5 38853815 38864930 Gso5g1544 5 38853815 38864930 ECH
Gso5g1544 5 38853815 38864930 Gso8g1176 8 10740829 10752130 GST
Gso5g1544 5 38853815 38864930 Gso18g0173 18 1492659 1503203 PCT
Gso5g1544 5 38853815 38864930 Gso13g1450 13 30005136 30015517 PCT