Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1528 ATGGGAACCGCTATAGGCATGTACAGCAACAACAACATCGTACCGGATTTCCTAGATCCGTATAGTGAAGAACTGATGAAAGCACTTATGCCTTTTATGAAAAGTGATTATTTCTCTGCCTCTTCTTCTTCACGCGAATCACACCCTTCTCCTCTTATTCCATCTAATTCTCTCCCCTCCTCCAACCAAATCAGGCTCAACCAACTCACCCAAGACCAAATTCTCCAGATTCAGGCCCAAATCCACATTCAGCAGCAGCACGTGGCCCAAGGCCAAGCCCACCTGGGCCCAAAACGCGTCCCTATGAAACACGCCGGCACGGCCGCGAAAGCCGCGAAGCTCTACCGCGGGGTGCGGCAACGGCATTGGGGCAAGTGGGTCGCCGAAATCAGACTCCCCAAGAACCGCACGCGCCTCTGGCTCGGAACATTCGACACCGCAGAGGAAGCAGCATTAGCGTACGACAACGCTGCGTTTAAGCTCAGAGGCGAGTTCGCGCGTCTCAATTTCCCTCATCTACGACACCACGGAGCGTTTGTTTTCGGTGAGTTCGGAGATTACAGACCTCTACCTTCTTCCGTGGATTCGAAGCTGCAAGCTATTTGCGAAAGCTTGGCGAAACAAGAGGAAAAGCCGTGTTGCTCTGTCGAAGACGTGAAGCCCGTGATACACGCTGCTGAGCTGGCAGAGGTGGAGTCTGACGTGGCAAAATTGAACGCTGAATATGTTTATCCCGAGTTCGAGGATTTTAAGGTCGAGAACGAGAACCCAATGTTGTCCTCGTCTGTGTCTGGCGAATCTTCTTCGCCTGAATCTGGTGTTACTTTCTTGGATTTCTCGGACTTCTCGGATTCTAATAATCAGTGGGATGAAATGGAGAATTTTGGGTTGGAGAAGTTCCCTTCTGTGGAGATTGATTGGGCGGCAATATGA 933 0.5102 MGTAIGMYSNNNIVPDFLDPYSEELMKALMPFMKSDYFSASSSSRESHPSPLIPSNSLPSSNQIRLNQLTQDQILQIQAQIHIQQQHVAQGQAHLGPKRVPMKHAGTAAKAAKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDNAAFKLRGEFARLNFPHLRHHGAFVFGEFGDYRPLPSSVDSKLQAICESLAKQEEKPCCSVEDVKPVIHAAELAEVESDVAKLNAEYVYPEFEDFKVENENPMLSSSVSGESSSPESGVTFLDFSDFSDSNNQWDEMENFGLEKFPSVEIDWAAI* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1528 310 SUPERFAMILY DNA-binding domain 114 172 IPR016177 GO:0003677
Gso5g1528 310 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Gso5g1528 310 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 52 - -
Gso5g1528 310 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 63 310 - -
Gso5g1528 310 CDD AP2 113 173 IPR001471 GO:0003700|GO:0006355
Gso5g1528 310 Gene3D AP2/ERF domain 113 172 IPR036955 GO:0003700|GO:0006355
Gso5g1528 310 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
Gso5g1528 310 MobiDBLite consensus disorder prediction 40 59 - -
Gso5g1528 310 Pfam AP2 domain 115 164 IPR001471 GO:0003700|GO:0006355
Gso5g1528 310 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Gso5g1528 310 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Gso5g1528 310 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 63 310 - -
Gso5g1528 310 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF060-LIKE 1 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1528 Gso-Chr5 38717615 38719227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1528 4 310 AP2-EREBP Transcription Factor Family AT4G39780 50.000 4.97e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso5g1528 AP2 2.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1528 K09286 - gmx:100797648 537.724