Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1513 ATGAATGATTTGATGACAAAATCGTTCCAAAGTTACGCCGAACTGAAGAAACAGGCTGAGAAGGACAATCTTGAAGATTCTCATGACATTGAAGCAGGGAAACTCAACAACCCCACGGATTACCATAACCTCTCACAGTTCTTCCAAGAAGTTGAAGCAATCAAGGTTGAAATGGAAGAGGTCGCTACCCTCTTATTCGACCTTTTGCAACTGCATGAAGAGACAAAGTGCACTGACAGTGCAAAAGTCCTACGTGGCCTAAGAGACCGCATGGTGTCTGACATGGTTACCTTGTTTTGCAAGGCAAGGATCATCAATTCAAGGTTCGAGGTTCTTGACCAATCCAACATAACCAATCACACTTTATCAGAATCCTGTAAAGAAGGAATCCAAATTGATGACCAGAATGTCTGTCACAAATCGTTTTGTTGGCCAGGATCGTGTGGCCAGTGTTGA 456 0.432 MNDLMTKSFQSYAELKKQAEKDNLEDSHDIEAGKLNNPTDYHNLSQFFQEVEAIKVEMEEVATLLFDLLQLHEETKCTDSAKVLRGLRDRMVSDMVTLFCKARIINSRFEVLDQSNITNHTLSESCKEGIQIDDQNVCHKSFCWPGSCGQC* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1513 151 Gene3D - 40 141 - -
Gso5g1513 151 PANTHER SYNTAXIN 3 136 IPR045242 -
Gso5g1513 151 Pfam Syntaxin 46 124 IPR006011 GO:0016020
Gso5g1513 151 ProSitePatterns 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 143 151 IPR006058 GO:0051537
Gso5g1513 151 PANTHER SYNTAXIN-112 3 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1513 Gso-Chr5 38558264 38558719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1513 1 133 SNARE and Associated Proteins AT2G18260 52.555 8.07e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1513 K08486 - gsj:114411375 311.227