Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1511 ATGGCTGAGGCCAGACACTACGTCCCCCCCTCTCAATTGGATATTAAGCAAATTATTTTAGAAGCACAGCATCGATGGCTACGTCCGGCTGAAATCTGTGCAATTCTCAGTAATCACAAGAAGTTTCTAATTGCTTCGGAACCTGCACATATGCCACCAAGTGGTTCACTTTTCTTATTTGATCGGAAGGTGCTGAGATACTTCAGAAAGGATGGCCATAACTGGAGGAAGAAAAAAGATGGAAAAACAGTTAGAGAAGCTCACGAGAGACTAAAGGCTGGAAGCGTGGATGTGTTGCATTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCGAAGACGCACATATTGGCTACTTGAAGAGGAACTCTCTCACATTGTTCTCGTCCATTATCGACATGTGAAGGGAACCAAGGCAAATTTTACATGTGCTAAAGAAAATGAAGAAACTCTTCCTTATGCTCAACAAACTGATAAAATTATGCCCAAAACAGAGATGGAAACTTCTTTATCATCTACTCTTCATCCACATAGTTACCAGGTTCCTTCACAAACTATGGATAGAAGCATGAACAGTTCCCAAGCATCAGAATATGAAGAAGCAGAATCTGCATTCAACAACCATGCAAGTTCTGAGTTTTATTCTTTCCTTGAGTTAGAATGCCCTGTTGAGAAGATTACACCTCAACCTGCTGATTCTTATTCTCCTCGGCCACTCACAAATGATCAAGAGAAGTCACCTGTCATTCCTGGGGTGAATTATATCTCACTCACTCAAGACAATAAAATCAAAGACATTCATAATTTTGGATTGACATATGAATCCCCAAAACCCCTTGGCTTTTCCTCATGGGAAGGTATCTTAAAAAATAATGCTGGAAGTCAACATGTGCCTTTTCAGCCTTTATTTCCTGGAACACAGCCTGACAACATGGGAATCAATAGCAAATTTTCCCAAGGACATGAGATAATGGTGCCATATTTGACCACCAGCATTGCTAAGCAGCATGAGAATGGAAGTCTCATACAAGCTGAAGGAAATTGGCAGGCTTATGATGTTGATTCTTTACGCATGTCCAGTTGGCCTATAGATAGTGCTTATTCAGGCTCATCATGTGACATAACTTGCAGCAACCGTGAGCAGGAGGTTAATGATGTTGATTTGCAGAAATCCTTGGAACAGTGTCTTCTACATCCATACAAACAAAACAAGGTTTTCATGCAAAATGATCCTCAGGAAAAACTTTTGAATGAAAAAGAAAAGATAAAATCAGACCTAGAGGCCAATAGAATCCTGGATGGAATAGAAGACACATATTTCACTTTTAAAAGGACTCTGTTAGATGGATCTCCAGCAGAAGAGGGTCTGAAGAAGCTTGACAGTTTCAACCAATGGATGAGTAAAGAGCTTGCAGATGTGGAAGAGTCTAATAAACCATCCACTTCTGGTGGTTATTGGGATACAGTTGAAAGCGAAAATGAGGTTGGCAACACAACTATTCCTTCACAAGGGCACCTGGACACCTATGTATTGGATCCATCTGTTTCCCATGATCAGCTTTTTAGCATTATAGACTATTCCCCAAGCTGGGCATTTGAAGGGTCAGAAATTAAGGTTATTATTTCTGGACGATTCTTAAGAAGTCAACATGAAGCAGAACAAGGTAAATGGTCATGCATGTTTGGCGAGGTAGAAGTGCCAGCAGAGATCATTGCAAAAGGTGTTCTTTGTTGTCATACTCCTCCACACAAGGCTGGGAGGGTACCTTTCTATGTAACTTGTTCCAATAGGTTAGCATGTAGTGAGGTGAGAGAATTTGATTTCCAAGTCAACTATACTCCAGAAGTTAACACTACAGGTGAGAATAGAGGCAGCACTTTTGATACTTTTAGTATCCGATTTGGAGAACTGTTGTCCCTGGGGCATGCCTTTCCTCAGAATTCAGATTCAATTAGTGTTAGTGAGAAATCTCAACTGAGAAGTAAAATCAATTCTTTACTGAGGGAGGAGGAGGATGATTGGGACAAGCTACTGAAACTTACTCAAGAGGAAGATTTTTCTCCAGAAAATTTACAGGAGCAGCTGCTTCAAAATCTTCTGAAAGATAAGTTACATGCATGGCTCCTTCAGAAAATAACAGAAGAGGGGAAAGGCCCTAATATATTAGATGAGGGTGGCCAAGGTGTGCTTCATTTTGCATCTGCTCTTGGCTATGATTGGGCCCTAGAACCCACAATAGTTGCTGGTGTGAATGTGAACTTTCGGGATGTAAATGGATGGACTGCTCTTCATTGGGCAGCATTTTGTGGCAGGGAGCGCACAGTTGCTTTCCTCATCTCTCTCGGCGCAGCACCTGGAGCACTGACTGATCCATGTCCAGAACATCCTTCTGGTAGAACACCAGCTGACCTAGCTTCTGCAAATGGACACAAAGGAATTGCAGGGTATCTTGCTGAGTCTTCACTAAGTGCACACCTCACAACTCTCGATTTGAACAGGGACGCAGGAGAAAATTCCGGAGCAAAAGTAGTCCAAAGAGTCCAAAACATTGCTCAAGTTAATGATCTTGATGGTTTATCATATGAATTGTCATTGAAAGATTCATTGGCTGCAGTGCGTAATGCCACCCACGCTGCAGCTCGTATTCATCAAGTTTTCAGAATGCAATCATTTCAGAGAAAACAACTGAAGGAATATGATGACAAACTTGGATTATCTGATGAACGTGCTCTTTCACTTGTAAAAATGAATATGAAATCACACAAGTCTGGACCACGTGATGAGCCTGTCCATGCTGCTGCAGTACGAATCCAAAACAAATTCCGCAGTTGGAAGGGAAGAAGAGAATTTTTAATGATTCGACAACGCATAGTAAAAATTCAGGCTCACGTGAGAGGTCACCAGGTCAGGAAAAGCTGTGGGAAGATAATTTGGTCCGTTGGAATCTTGGAGAAGGTTATTTTACGTTGGCGTCGAAAAGGTAGTGGTTTGCGTGGATTTAAACCGGAGGCCAATTCTGAGGGAACTATGATACAAGATGTATCTTCAACAGATGATGACTATGATGTCTTAAAAGAAGGCAGGAAGCAAACAGAGCAAAGGTTGCAGAAAGCCCTAGCTAGGGTGAAGTCAATGGTTCAGTATCCAGAGGCAAGAGACCAATACCATAGGCTGTTGAATGTTGTAACTGAGATCCAAGAAAATCAGGTAAAGCATGAGAGCAGTTATAACAATTCAGAAGAACCGAGAGAATTCGGTGACCTCAACGATCTTGAAGCATTGTTGGACGAAGATATTTTCATGCCTACAGCAACTTAG 3321 0.4155 MAEARHYVPPSQLDIKQIILEAQHRWLRPAEICAILSNHKKFLIASEPAHMPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENENFRRRTYWLLEEELSHIVLVHYRHVKGTKANFTCAKENEETLPYAQQTDKIMPKTEMETSLSSTLHPHSYQVPSQTMDRSMNSSQASEYEEAESAFNNHASSEFYSFLELECPVEKITPQPADSYSPRPLTNDQEKSPVIPGVNYISLTQDNKIKDIHNFGLTYESPKPLGFSSWEGILKNNAGSQHVPFQPLFPGTQPDNMGINSKFSQGHEIMVPYLTTSIAKQHENGSLIQAEGNWQAYDVDSLRMSSWPIDSAYSGSSCDITCSNREQEVNDVDLQKSLEQCLLHPYKQNKVFMQNDPQEKLLNEKEKIKSDLEANRILDGIEDTYFTFKRTLLDGSPAEEGLKKLDSFNQWMSKELADVEESNKPSTSGGYWDTVESENEVGNTTIPSQGHLDTYVLDPSVSHDQLFSIIDYSPSWAFEGSEIKVIISGRFLRSQHEAEQGKWSCMFGEVEVPAEIIAKGVLCCHTPPHKAGRVPFYVTCSNRLACSEVREFDFQVNYTPEVNTTGENRGSTFDTFSIRFGELLSLGHAFPQNSDSISVSEKSQLRSKINSLLREEEDDWDKLLKLTQEEDFSPENLQEQLLQNLLKDKLHAWLLQKITEEGKGPNILDEGGQGVLHFASALGYDWALEPTIVAGVNVNFRDVNGWTALHWAAFCGRERTVAFLISLGAAPGALTDPCPEHPSGRTPADLASANGHKGIAGYLAESSLSAHLTTLDLNRDAGENSGAKVVQRVQNIAQVNDLDGLSYELSLKDSLAAVRNATHAAARIHQVFRMQSFQRKQLKEYDDKLGLSDERALSLVKMNMKSHKSGPRDEPVHAAAVRIQNKFRSWKGRREFLMIRQRIVKIQAHVRGHQVRKSCGKIIWSVGILEKVILRWRRKGSGLRGFKPEANSEGTMIQDVSSTDDDYDVLKEGRKQTEQRLQKALARVKSMVQYPEARDQYHRLLNVVTEIQENQVKHESSYNNSEEPREFGDLNDLEALLDEDIFMPTAT* 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1511 1106 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Gso5g1511 1106 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 927 980 IPR027417 -
Gso5g1511 1106 SMART CG_1_2 18 136 IPR005559 GO:0003677
Gso5g1511 1106 Pfam IPT/TIG domain 524 599 IPR002909 -
Gso5g1511 1106 Pfam Ankyrin repeats (3 copies) 731 827 IPR002110 GO:0005515
Gso5g1511 1106 ProSiteProfiles Ankyrin repeat profile. 759 791 IPR002110 GO:0005515
Gso5g1511 1106 ProSiteProfiles IQ motif profile. 932 960 IPR000048 GO:0005515
Gso5g1511 1106 Gene3D - 929 977 - -
Gso5g1511 1106 Coils Coil 1022 1042 - -
Gso5g1511 1106 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Gso5g1511 1106 SUPERFAMILY E set domains 524 609 IPR014756 -
Gso5g1511 1106 ProSiteProfiles IQ motif profile. 954 978 IPR000048 GO:0005515
Gso5g1511 1106 MobiDBLite consensus disorder prediction 228 247 - -
Gso5g1511 1106 SUPERFAMILY Ankyrin repeat 710 821 IPR036770 -
Gso5g1511 1106 Pfam IQ calmodulin-binding motif 956 973 IPR000048 GO:0005515
Gso5g1511 1106 Pfam IQ calmodulin-binding motif 932 951 IPR000048 GO:0005515
Gso5g1511 1106 Gene3D Immunoglobulins 517 613 IPR013783 -
Gso5g1511 1106 SMART ANK_2a 759 788 IPR002110 GO:0005515
Gso5g1511 1106 SMART ANK_2a 798 827 IPR002110 GO:0005515
Gso5g1511 1106 ProSiteProfiles Ankyrin repeat region circular profile. 759 784 - -
Gso5g1511 1106 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 190 - -
Gso5g1511 1106 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 322 1070 - -
Gso5g1511 1106 SMART iq_5 953 975 IPR000048 GO:0005515
Gso5g1511 1106 SMART iq_5 930 952 IPR000048 GO:0005515
Gso5g1511 1106 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 2 1 190 - -
Gso5g1511 1106 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 2 322 1070 - -
Gso5g1511 1106 Gene3D - 682 848 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1511 Gso-Chr5 38541231 38549166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1511 1 1088 CAMTA Transcription Factor Family AT5G64220 46.787 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Gso5g1511 Ank_2 1.2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1511 K21596 - gmx:100798875 2202.56