Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1507 ATGCCAAACACCACTGAAGAATTCCATAACAACAACTGCTTCGAGTCTCTCCATGTTTCCCTTCGCAACCTCTCCCAACTCAGCACCCGAATGGATTCCCTTCAAAGCTTCCTGTCCCATTCCATCCAATCCCACACTCTCCTCACTCACCACCAAATGAGCACAGTCTCCAACGAGATCCTAACCGCCATTCGCCACGTCATCACCAACAGCGCCGCCCTCGTCGCCGCCTCGGGAAACGTGCTTCCTCTCTCGGAGACTCCGACTTTGGACTCTCCGAACCTCAACAACAACAACAGCAACGACAACGTGGTGGAGCTCGACGCGATGGAGCTGCTGGCGAAGCACCTTCACTTCTGCGAGGTGTGCGGGAAAGGCTTCACGCGCGACGCGAATCTGAGAATGCACATGCGCGCGCACGGGGACGAGTTCAAGACCCCGGAGGCACTCGCCAACAAGGCGCGTGGGGAGACGCGCCTCAAGGCGGCGCGGTTTTCGTGCCCCTTGGAGGGGTGCAACCGTAACAAGACGCACAAGAAGTTCAGGCCGTTGAAGTCGGTGTTCTGTCTGAGGAACCACTTCAAGAGGAGCCACTGTCCCAAAACGCTGTCGTGCCAGCGGTGTCGGAAGAAGAGCTTCGCGGTGCTGTCGGACTTGAGGAGCCACGTCAAGCAGTGTCGGGGAGAGGCCACGTGGAAGTGCTCATGCGGGACTACGTTTTCGAGGAAGGACAAGCTGTTGGGACACGTGGCGCTGTTCGAGGGGCATTCGCCGATGCTTGAAGAGGAGGCCCCAGTGGCAGTGGCGGTGAAGGAAAGTGAGGGTGGTTTGGATGGGTTACCTGAAGGGTTCTTTGATGGTTTGGATGAATTTGGATTTGGATCCATTCAAAACAACTGTTCACATGCAGGAGCAAGCTTAGCCTTAGGGCTTCCCTCAAATAATTTATATGCATGGGAACTCTCTTTTTCTAATTTAATCTAG 984 0.5528 MPNTTEEFHNNNCFESLHVSLRNLSQLSTRMDSLQSFLSHSIQSHTLLTHHQMSTVSNEILTAIRHVITNSAALVAASGNVLPLSETPTLDSPNLNNNNSNDNVVELDAMELLAKHLHFCEVCGKGFTRDANLRMHMRAHGDEFKTPEALANKARGETRLKAARFSCPLEGCNRNKTHKKFRPLKSVFCLRNHFKRSHCPKTLSCQRCRKKSFAVLSDLRSHVKQCRGEATWKCSCGTTFSRKDKLLGHVALFEGHSPMLEEEAPVAVAVKESEGGLDGLPEGFFDGLDEFGFGSIQNNCSHAGASLALGLPSNNLYAWELSFSNLI* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1507 327 SMART c2h2final6 165 198 IPR013087 -
Gso5g1507 327 SMART c2h2final6 203 224 IPR013087 -
Gso5g1507 327 SMART c2h2final6 118 140 IPR013087 -
Gso5g1507 327 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 266 - -
Gso5g1507 327 Pfam Zinc-finger of C2H2 type 119 138 - -
Gso5g1507 327 SUPERFAMILY beta-beta-alpha zinc fingers 116 144 IPR036236 -
Gso5g1507 327 Gene3D Classic Zinc Finger 157 254 - -
Gso5g1507 327 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Gso5g1507 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Gso5g1507 327 Gene3D Classic Zinc Finger 118 147 - -
Gso5g1507 327 PANTHER OSJNBA0019G23.4 PROTEIN 14 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1507 Gso-Chr5 38510056 38511187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1507 88 271 C2H2 Transcription Factor Family AT5G22890 53.191 7.42e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso5g1507 zf-met 0.0014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1507 - - gmx:100798348 627.476