Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1498 ATGGAAGAGGAAGAGCACGAGGTGTACGGAGGAGAGATCCCTGACGAGGGAGAGATGGAAGGAGACATTGACATGTCCGCCGCCGACGATGACGCCGCCGTCAAGGAGCTCGACGAGATGAAGCGCCGATTGAAGGAAATGGAAGAGGAAGCCGCAGCGCTTCGCGAGATGCAAGCCAAGGTCGATAAGGAGATTGGCAGCGTTCAAGATCCTGCTAATTCAGCTGCTTCTCAGGCAAACAAGGAGGAGGCAGATTCTCGGTCTGTTTTTGTTGGCAATGTTGATTATGCATGCACACCAGAAGAAGTGCAGCAACACTTTCAGTCCTGTGGTACTGTAAACAGGGTCACTATCCTGACTGACAAGTTTGGCCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAGCTGAGGCTGTTCAAGAGGCTCTCCTGTTAAATGAATCTGAATTGCATGGCCGTCAATTGAAGGTTTTGCCTAAGAGGACCAATGTTCCTGGAATGAAACAATATCGTCCTAGGCGCTTTAATCCTTACATGGCATATGGCTTCAGGAGGCCATATACTCCTCCTTACTTTTACTCCCCTTATGGATACGGGAAGGTTCCTAGGTTTCGAAGGCCAAATCGTTACATGCCGTACCACTAG 648 0.4907 MEEEEHEVYGGEIPDEGEMEGDIDMSAADDDAAVKELDEMKRRLKEMEEEAAALREMQAKVDKEIGSVQDPANSAASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAVQEALLLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMAYGFRRPYTPPYFYSPYGYGKVPRFRRPNRYMPYH* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1498 215 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 1 213 - -
Gso5g1498 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 163 IPR000504 GO:0003723
Gso5g1498 215 Gene3D - 15 170 IPR012677 -
Gso5g1498 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Gso5g1498 215 MobiDBLite consensus disorder prediction 63 84 - -
Gso5g1498 215 CDD RRM_II_PABPs 88 159 - -
Gso5g1498 215 SUPERFAMILY RNA-binding domain, RBD 77 183 IPR035979 GO:0003676
Gso5g1498 215 SMART rrm1_1 88 159 IPR000504 GO:0003723
Gso5g1498 215 Coils Coil 30 64 - -
Gso5g1498 215 MobiDBLite consensus disorder prediction 1 23 - -
Gso5g1498 215 MobiDBLite consensus disorder prediction 70 84 - -
Gso5g1498 215 PANTHER - 1 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1498 Gso-Chr5 38437826 38442412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1498 84 158 Eukaryotic Initiation Factors Gene Family AT2G36660 34.211 2.76e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1498 K14396 - gmx:100789721 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1498 5 38437826 38442412 Gso8g1128 8 10361367 10366370 GST