Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1489 ATGGATCCTCATCTTCCTAAGAATGGAACCCAACAACACCATGGTACCCCAACACCTTCCCCAGCTTCAGTTGCAAATAATATTATAATACCACATCCTGAATTCCGGATACCTTCCTTTAAAGAACATCACAAAAATGTTCCTCAACTCGCGATGATTGTCATGGCATGCATGGTTGGCGTCATCATGTTTCTCTGCGCCGTGTCCGTACTCATAAGGTACTTCTACTCAAGAAGATATAGCCGCAATAACCAAAACAGAAGAGTCGACGCCCCCATATTGTTCGATTTGAACGGAGATTCTCCTCCGAGTTCGGATAACGATGATGACGTGGAGGAGTTGGCGGTTGTCCACCCGATATGGTACATCCGTACGGTGGGTCTCCAACAGTCCCTCATAGACTCCATCACGGTATTCAAATACAAGAAAGGCGAAGGCATCATAGACGGCACCGAGTGTTCGGTTTGCCTCGGAGAGTTCGAACACGACGAGAGTCTGAGGTTGTTGCCCAAGTGCAGCCACGCCTTCCACATCCCTTGCATTGACACGTGGCTCAGGTCTCACAAAAATTGCCCCTTGTGTCGTGCACCTGTGCTACGCGACGAAACTGACGGCGCGCATGTGATCAGAGCCGTTGATCAGAGTAATCAGACGGTTTCAAACGTTTCTGGTCATCAAGAGGCCCGCGTGGAGAGTTCTGATCATGAGAGGGTTGAAGATGATGATGTGTCTTCGGCCGCAGTGGAAGTGGTAGAGGCAACACAGCCTCTGAGAAGATCGGTTTCGATGGATTCTTCTTCTGCTAATTCAATGGTGTTATTTGGTGATGTGGTGGTGGATTTAGATACCCATCATTGTGGTGAAAAAGTGAATTATTCAAGTAATAAGGATATGAGTGTTGTTGTTAATGAGAAGCATGGTAGTGGGAGCTCAACTTCAACAACTATTATTAATAACAAGTTGGCTTCAATTGGACGTGCGTTGCAAAAGAGGCCGATCTCCGTCTCAATGAGAATGAGAAGATCTTTTTCACATAACACCAAGTTTTTGTTCTCCAGACACTGTAGGAGTCAGAGTTCAACTCTTCCATTGTAA 1095 0.463 MDPHLPKNGTQQHHGTPTPSPASVANNIIIPHPEFRIPSFKEHHKNVPQLAMIVMACMVGVIMFLCAVSVLIRYFYSRRYSRNNQNRRVDAPILFDLNGDSPPSSDNDDDVEELAVVHPIWYIRTVGLQQSLIDSITVFKYKKGEGIIDGTECSVCLGEFEHDESLRLLPKCSHAFHIPCIDTWLRSHKNCPLCRAPVLRDETDGAHVIRAVDQSNQTVSNVSGHQEARVESSDHERVEDDDVSSAAVEVVEATQPLRRSVSMDSSSANSMVLFGDVVVDLDTHHCGEKVNYSSNKDMSVVVNEKHGSGSSTSTTIINNKLASIGRALQKRPISVSMRMRRSFSHNTKFLFSRHCRSQSSTLPL* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1489 364 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 204 IPR013083 -
Gso5g1489 364 SUPERFAMILY RING/U-box 136 201 - -
Gso5g1489 364 MobiDBLite consensus disorder prediction 1 25 - -
Gso5g1489 364 CDD RING-H2_PA-TM-RING 152 195 - -
Gso5g1489 364 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Gso5g1489 364 PANTHER RING-H2 FINGER PROTEIN ATL54 24 356 - -
Gso5g1489 364 SMART ring_2 153 194 IPR001841 -
Gso5g1489 364 MobiDBLite consensus disorder prediction 228 244 - -
Gso5g1489 364 MobiDBLite consensus disorder prediction 217 246 - -
Gso5g1489 364 MobiDBLite consensus disorder prediction 9 25 - -
Gso5g1489 364 Pfam Ring finger domain 152 195 IPR001841 -
Gso5g1489 364 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 24 356 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1489 Gso-Chr5 38305345 38307062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1489 117 266 C3H Transcription Factor Family AT5G10380 50.625 3.11e-42 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1489 - - gmx:102663026 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1489 5 38305345 38307062 Gso18g0127 18 1066425 1067528 PCT
Gso5g1489 5 38305345 38307062 Gso13g1492 13 30423901 30432307 PCT