Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1488 ATGGGAAGAACCAAAGTCTCCACCCTCTTTGCCAATAAGCACAACAACAACAATTACATGCTTCCTTATTCCAACACCATAAGACAAACTCTTGTAAACAGGCCAAATACCCACAAAGACCGGTTCCCCTTTTCACTCTTTGAATTATTGCGGCGCCTTATTCATTCAAGTATTCCTTACGACATCTTCTTCCATTTTCATTCACACTTCTCTCTAACTAGAAAAGTAGATGGAGACTCAAAAACCGAGGAAGAGGAGAAAGTCTACTCTTGGTTATACACCTTGGCCCAGTCAGACAAAAACTTGGTTTTCGAGTACGTTAGGTCCACTGAGAGAGGCTTAAGTTTCACAGAAGCCGATAGGAGACTGAGGGAAAATGGGCCAAATGTTCCACTTGAGTATTCCTTTCCAAGATGGTGGCATCTTCTATGGAACTCTCTTTTCCATCCTTTCATTATCATTCTGATTGTTTTGTCAGTTCTGTCATTCATTACCTGCGACAGTCCAAATGGATTTATCATGCTCATATTGGTTTTCATCAGTGTCACCCTTCGTTTCTATCAGGAATACAGCAGCTCAAAAGCAGCAATGAAGCTTTCAGAATTTGTAAAATGTCCAATAAAAGTTCAAAGATGCGCTGGTAGAGTTGTTCAGAAAGAACTTGTAGTTCAAGTTGATCAGAGGGATGTAGTTCCAGGTGACATTGTGATTTTTGAACCTGGTGACCTCTTTCCTGGAGATATCAGGTTGTTATCTTCTAAACAACTTGTTGTAAGCCAGGCATCACTAACTGGGGAATCTTGGACAACTGACAAAACTGCTGAAATCAGAGAAGATCACAGCACTCCTTTATTGGATTTAAAGAACATCTGCTTTATGGGCACAAACGTGGTATCTGGTACTGGAACAGGCTTAGTGATTTCCACAGGATCCAATACTTACATGAGCACCATGTTTTCAAAAGTTGGGAAGAAGAAACCACCAGATGAATTTGAAAAGGGTCTCAGACGGATATTTTACTTGCTTATTTCTGTCATTCTAGCAGTTGTTACCATCATGTTTGTGATAAATTACACTACATCTCTTAATTTGAGCCAGAGTGTTCTTTTTGCCATCTCAGTTGCATCTGCCCTCAATCCTCAGATGCTTCCCCTCATCATTAACACATGTCTTGCAAAAGGAGCACTTGCTATGGCTAAAGACAGATGTATAGTAAAAAGTTTAACATCTATACGCGACATGGGATCAATGGATATTCTTTGTATTGATAAGACAGGCTCCCTTACAATGAATCATGCAATCATGGTTAATCATCTTGACTGCAGGGGTTTACCCCAAGAAAAAATTTTACGCTATGCCTTCCTCAACTCTTACTTTAAGAGTGACCAGAAGTATCCTCTGGATGATGCTATCCTAGCATTTGTATATTCAAATGGATTCAGGTTTCAGCCATCTAAGTGGAGGAAGATAGATGAGATTCCTTTTGACTTCATAAGAAGAAGAGTATCTGTCATCTTAGAAACAGAAGGCGGACACTCACAATTCTTTGGCAGGTTCCTGTTAACAAAAGGAGCACTGTTAGAAGTATTGAGAGTTTGTTCTTTCATTGAGAATTTCGATAAAGATGAAATTTCTCCCTTCTCTTCAGATGATTATCAGCGGATTTTAAATCTCTCAGAAGATTTGAGCAATGAGGGGTTAAGGGTAATAGCAGTAGCTATAAGGAAGCTGGAAATGCCCCAAATATGCGAAACAAGTAATGGAAGCAAGAGAGAAGAGGAGGATATTGAAAGAGACATGGTGTTCATCGGCCTCATAACGTTTTTCGACCCACCAAAGGACTCAGCAAAGCAAGCACTGTGGCGTTTGTCCGAGAAGGGAGTGAAGGCTAAGGTTTTAACTGGTGACTCCCTCTCCTTGACAACAAGGGTATGCAGGGAAGTTGGCATAAGTACCACTCATGTAATAACAGGTCCTGAACTAGAACAACTTGACCAAAACACTTTCCATGAGACAGTTCAAAGAGCCACAGTACTCGCTCGTCTCACCCCAATTCAGAAACAACGAGTGGTGCAATCCTTGCAAACAATTGGAAACCATGTCGTTGGGTTCTTAGGAGATGGAGTGAATGATTCACTAGCTTTAGATGCTGCCAATGTAAGCATTTCTGTGGACTCAGGTGTAGCCATTGCCAAAGACATGGCTGATATTATCTTACTTGAGAAAGACCTCAACGTGCTTGTTGCAGGAGTGGAGCATGGTAGACTTAGTTTTGGCAACACAATGAAGTATCTTAAGATGTCAGTGATAGCTAACTTGGGAAGTGTCATTTCACTCCTCATAGCAACACTGTTATTCAAGTATGAGCCCTTAACTTCTAGACAGCTTCTTACTCAGAATTTCATCTACAGTGTGGGACAGATTGCCCTTGCTTGGGACAAGATGGATGAAGAGTATGTTAAGACACCTCACAAGTCCTCAGAGAGAGGCTTGTCCATGTTCATGTTGTGGAATGCACCAGTGTGCACCCTTTGTGATGTGGCAACACTTTTGTTTCTTTGGTTTTATTACAAGGCTTACACTGATGTGACTCAGAAGTTTTTCCATTCAGCTTGGTTCATTGAAGGTCTCCTATTGCAGACCCTCATCATCCACTTGATAAGGACAGAGAAAATCCCTTTCATACAGGATGTTGCATCTTGGCCTGTGATTTTCTCCACTGTTGTGACATCTGCAATTGGAATTGCACTTCCATTCACACCCATTGGGAAGGTCATGGGATTCTCACTTATACCTCTTTCATATTTCGGATTTTTGGTGCTTCTTTTTCTGGGGTATTTTACAGTTGGCCAGGTCGTTAAGAGACTTTACATATTGGTTTATAAGAAATGGCTTTGA 2898 0.4096 MGRTKVSTLFANKHNNNNYMLPYSNTIRQTLVNRPNTHKDRFPFSLFELLRRLIHSSIPYDIFFHFHSHFSLTRKVDGDSKTEEEEKVYSWLYTLAQSDKNLVFEYVRSTERGLSFTEADRRLRENGPNVPLEYSFPRWWHLLWNSLFHPFIIILIVLSVLSFITCDSPNGFIMLILVFISVTLRFYQEYSSSKAAMKLSEFVKCPIKVQRCAGRVVQKELVVQVDQRDVVPGDIVIFEPGDLFPGDIRLLSSKQLVVSQASLTGESWTTDKTAEIREDHSTPLLDLKNICFMGTNVVSGTGTGLVISTGSNTYMSTMFSKVGKKKPPDEFEKGLRRIFYLLISVILAVVTIMFVINYTTSLNLSQSVLFAISVASALNPQMLPLIINTCLAKGALAMAKDRCIVKSLTSIRDMGSMDILCIDKTGSLTMNHAIMVNHLDCRGLPQEKILRYAFLNSYFKSDQKYPLDDAILAFVYSNGFRFQPSKWRKIDEIPFDFIRRRVSVILETEGGHSQFFGRFLLTKGALLEVLRVCSFIENFDKDEISPFSSDDYQRILNLSEDLSNEGLRVIAVAIRKLEMPQICETSNGSKREEEDIERDMVFIGLITFFDPPKDSAKQALWRLSEKGVKAKVLTGDSLSLTTRVCREVGISTTHVITGPELEQLDQNTFHETVQRATVLARLTPIQKQRVVQSLQTIGNHVVGFLGDGVNDSLALDAANVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLSFGNTMKYLKMSVIANLGSVISLLIATLLFKYEPLTSRQLLTQNFIYSVGQIALAWDKMDEEYVKTPHKSSERGLSMFMLWNAPVCTLCDVATLLFLWFYYKAYTDVTQKFFHSAWFIEGLLLQTLIIHLIRTEKIPFIQDVASWPVIFSTVVTSAIGIALPFTPIGKVMGFSLIPLSYFGFLVLLFLGYFTVGQVVKRLYILVYKKWL* 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1488 965 PRINTS Magnesium-transporting ATPase signature 334 350 IPR006415 GO:0015444|GO:0015693|GO:0016021
Gso5g1488 965 PRINTS Magnesium-transporting ATPase signature 351 370 IPR006415 GO:0015444|GO:0015693|GO:0016021
Gso5g1488 965 PRINTS Magnesium-transporting ATPase signature 455 468 IPR006415 GO:0015444|GO:0015693|GO:0016021
Gso5g1488 965 PRINTS Magnesium-transporting ATPase signature 763 778 IPR006415 GO:0015444|GO:0015693|GO:0016021
Gso5g1488 965 PRINTS Magnesium-transporting ATPase signature 813 826 IPR006415 GO:0015444|GO:0015693|GO:0016021
Gso5g1488 965 PRINTS Magnesium-transporting ATPase signature 833 849 IPR006415 GO:0015444|GO:0015693|GO:0016021
Gso5g1488 965 PRINTS Magnesium-transporting ATPase signature 868 889 IPR006415 GO:0015444|GO:0015693|GO:0016021
Gso5g1488 965 PRINTS Magnesium-transporting ATPase signature 918 939 IPR006415 GO:0015444|GO:0015693|GO:0016021
Gso5g1488 965 Pfam Cation transporter/ATPase, N-terminus 105 162 IPR004014 -
Gso5g1488 965 SUPERFAMILY HAD-like 596 753 IPR036412 -
Gso5g1488 965 Gene3D - 170 917 - -
Gso5g1488 965 SUPERFAMILY Calcium ATPase, transduction domain A 215 320 IPR008250 -
Gso5g1488 965 TIGRFAM ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 85 964 IPR006415 GO:0015444|GO:0015693|GO:0016021
Gso5g1488 965 Pfam haloacid dehalogenase-like hydrolase 557 719 - -
Gso5g1488 965 PANTHER MAGNESIUM-TRANSPORTING ATPASE, P-TYPE 1 73 964 - -
Gso5g1488 965 Pfam E1-E2 ATPase 215 400 - -
Gso5g1488 965 SUPERFAMILY Calcium ATPase, transmembrane domain M 109 962 IPR023298 -
Gso5g1488 965 SMART Cation_ATPase_N_a_2 94 167 IPR004014 -
Gso5g1488 965 PANTHER CATION TRANSPORTING ATPASE 73 964 - -
Gso5g1488 965 Gene3D - 433 609 IPR023299 GO:0000166
Gso5g1488 965 Gene3D - 205 309 - -
Gso5g1488 965 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 670 784 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso5g1488 965 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 174 463 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso5g1488 965 Gene3D - 418 742 IPR023214 -
Gso5g1488 965 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 416 612 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1488 Gso-Chr5 38297868 38303432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1488 112 870 Primary Pumps ATPases(2) AT1G10130 26.249 2.30e-68 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1488 K01531 - gmx:100795153 1890.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1488 5 38297868 38303432 Gso8g1118 8 10247290 10252463 GST