Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1477 ATGTTAGGAGAAGAGAGTAACTACAACAACAACGACCGCGGCGGCGGTCACCGGAGAACAACACATTCCCGATCAGTTTCCTGGACCGACCGGTCTCCGGTTACCCGGAAACCGCCGCGTCCGCTTCAGCCTCTCGCCATCAACAAACGCAGCGTTATGGAGTGGCCGAGCGCCGGCTGCGACGATCTCGGCGATTGGTCTCTTCCACCGACCCCAAGAGGTTCCACCATAACACCAGATTCGGGTTCGGGTAAAGTATTTCAATTCAAGAAAGACTATTATGCGTTCTACGACAAGGAATGTTCGAGAATCGCGGAGCACGTGTACCTGGGGAGTGACACGGTGGCGAAGAGCCAGGAGCTGCTGCGGCGGCACGGAATCACGCACGTGCTCAATTGCGTCGGGTTCGTGTGCCCCGAGTATTTCAAAACAGACTTCGTCTACAAAACGCTCTGGCTGCGGGACTCACCCTCGGAGGACATCACCAGCATTCTCTACGACGTTTTCGATTACTTTGAGGATGTCCGCCAACAGGGCGGGCGCATGTTCGTCCACTGCTGCCAGGGCGTCTCGCGGTCGACCTCGCTGGTCATCGCCTATCTCATGTGGAGGGAAGGCCAGAGCTTCGAGGACGCGTTCCACTACGTCAAGAACGCGCGTGGCGTCACGAACCCCAACATGGGCTTCGCGTGCCAGCTGTTGCAGTGTCAGAAGCGGGTGCACGCTATGCCTGCGAGTCCCAGTTCTGTTCTCAGGATGTATAGGATGGCTCCTCATTCTCCTTACGACCCTCTTCATCTTGTCCCTAAGTTGGTAGATCATCCTTCCCCTCGCGCGCTTGATTCGCGTGGCGCGTTTGTTGTGCACGTGCCCTCTGCTATATACGTGTGGATTGGGAAGGAGTGTGGCTCCGCAATGTGTTGCAATGCAAGATCAGCGGCTGCTCAGGTTGTTCGGTATGAGAGAGCAACGGGGGAGATTGTTAGTGTGGTTGAGGATGAAGAGCCGAAGGAGTTTTGGATTGCTCTTTCTACCAAGGAAGTGGTGGTGGAGACTATGGAGATTGATGTGGGGATTCGTCCCAGGAGAGTTGAGGAGTATGATTTAGATTATGGGATTTTTCATAAGGCGCTTGCTGGTGGGGTTGTTCCACCTTTTTCTTTGTCTAATGCTGGATCCGAAAATTGCCTTCCCGCTAGAGAAAATGGGTGGGGGAGATTGACTAGGAAGCTTGCTAGTGGTATCATGAAAGGCTTGTTTACATCCTCTAAGTGCTGTGAGTCTAGTGTGAACATCATTGAAGAGGGGAATCAACATATGAATGTTGATCCTCTTCCACCTTCTTCCAACAATGTGGGTGGTTCGCGGGGTTCCTTTGAGTGTTTTGGCTCGGAGAGGGGAAAGGATAATGTTCAAGTCAGGGATCAGTTTGTTGTCCCTAGTGTTGTTGGTTCATCAATGCCGCTGCCACCATCGCCTCATCATCGAGCATCCGATTCTTTTGCTTGTTTTCTAAGGAGCAGCCCCAAATTCAGTTCCAACTCCCCAACTCTGTCGCCCACCAGTTCGGATTATGCAAGTTCCTTTACATTTTCGCCTTCATCGACTGACTTGTCAATTGTGTCTTCTCGGCAGCTATCCCCTTCTGGTCTGGAATCAGCTGAACCCGCTCATGTGAAAGACGCATCTTCCTCAGAGTTTCGCTCCTTAGTTAAGAAAGAAGGTGAGACATTTCTGGCTAATCACACCTTGGTAGGAGCAAAGTCCAGTTTGCGGCGCAAAGGAACTTCCCTCTCCATTGCAGAGCGCAGAGGGAATAACCCCCCACCTCGCATGTTGCTACCCTCAGCCAGCGAATCATCCCGTGCCAGCAAGGTCCGGGTAAGATCCAGGTCATTCTCATTGCCTGTCTTGGATGATACTTTGATGAAGGATGTTAGTTGCAAGCAAATCTAA 1956 0.522 MLGEESNYNNNDRGGGHRRTTHSRSVSWTDRSPVTRKPPRPLQPLAINKRSVMEWPSAGCDDLGDWSLPPTPRGSTITPDSGSGKVFQFKKDYYAFYDKECSRIAEHVYLGSDTVAKSQELLRRHGITHVLNCVGFVCPEYFKTDFVYKTLWLRDSPSEDITSILYDVFDYFEDVRQQGGRMFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFHYVKNARGVTNPNMGFACQLLQCQKRVHAMPASPSSVLRMYRMAPHSPYDPLHLVPKLVDHPSPRALDSRGAFVVHVPSAIYVWIGKECGSAMCCNARSAAAQVVRYERATGEIVSVVEDEEPKEFWIALSTKEVVVETMEIDVGIRPRRVEEYDLDYGIFHKALAGGVVPPFSLSNAGSENCLPARENGWGRLTRKLASGIMKGLFTSSKCCESSVNIIEEGNQHMNVDPLPPSSNNVGGSRGSFECFGSERGKDNVQVRDQFVVPSVVGSSMPLPPSPHHRASDSFACFLRSSPKFSSNSPTLSPTSSDYASSFTFSPSSTDLSIVSSRQLSPSGLESAEPAHVKDASSSEFRSLVKKEGETFLANHTLVGAKSSLRRKGTSLSIAERRGNNPPPRMLLPSASESSRASKVRVRSRSFSLPVLDDTLMKDVSCKQI* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1477 651 CDD DSP 101 235 - -
Gso5g1477 651 ProSitePatterns Tyrosine specific protein phosphatases active site. 184 194 IPR016130 GO:0016311|GO:0016791
Gso5g1477 651 Gene3D Severin 252 349 IPR029006 -
Gso5g1477 651 ProSiteProfiles Dual specificity protein phosphatase domain profile. 100 242 IPR020422 GO:0006470|GO:0008138
Gso5g1477 651 Pfam Dual specificity phosphatase, catalytic domain 108 238 IPR000340 GO:0008138|GO:0016311
Gso5g1477 651 MobiDBLite consensus disorder prediction 1 45 - -
Gso5g1477 651 MobiDBLite consensus disorder prediction 595 625 - -
Gso5g1477 651 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 92 242 IPR029021 -
Gso5g1477 651 SMART dsp_5 100 239 IPR020422 GO:0006470|GO:0008138
Gso5g1477 651 SUPERFAMILY Actin depolymerizing proteins 246 352 - -
Gso5g1477 651 Gene3D Protein tyrosine phosphatase superfamily 84 242 IPR029021 -
Gso5g1477 651 MobiDBLite consensus disorder prediction 11 25 - -
Gso5g1477 651 PANTHER MKPA PROTEIN 36 608 - -
Gso5g1477 651 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 159 220 IPR000387 GO:0016311|GO:0016791
Gso5g1477 651 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 36 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1477 Gso-Chr5 38210660 38213360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1477 41 136 Protein tyrosine phosphatase (PTP) family AT3G55270 47.273 1.13e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1477 - - gmx:100782633 1285.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1477 5 38210660 38213360 Gso8g1105 8 10148441 10151229 GST
Gso5g1477 5 38210660 38213360 Gso18g0115 18 964772 967923 PCT
Gso5g1477 5 38210660 38213360 Gso13g1505 13 30517902 30521707 PCT