Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1456 ATGCAGAGCCAAGTTGTGTGCAATGGTTGTAGGAGCCTTCTGCTTTACCCAAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTCCCCCTGGGATGGAAATGTCTCAACTTTATTGTGGAGGGTGTAGGACATTGCTAATGTACACACGTGGAGCTACAAGTGTGAGATGTTCCTGCTGTCACACTGTAAACCTTGTTCCACCAGGTACTAAATCATCTAATCAAGTAGCTCATGTCCATTGTGGGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTCCATCAGTCAAATGTGCTCTTTGTCACTTTATTACTAATGTCAGTACGAACAATGGAAGGCTTCCAATCCCTGTCCATAGACCCAATGGGACAACCAATGCTGGAACATTACCTACTACTTCAACATCAATGCCCCAATCTCAAAGTCAAACAGTAGTGGTAGAAAATCCAATGTCTGTTGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGGGTTACAACAGATAAGAAATAA 543 0.4346 MQSQVVCNGCRSLLLYPRGATNVCCALCNTITSVPPPGMEMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLVPPGTKSSNQVAHVHCGNCRTTLMYPYGAPSVKCALCHFITNVSTNNGRLPIPVHRPNGTTNAGTLPTTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1456 180 Pfam LSD1 zinc finger 7 31 IPR005735 -
Gso5g1456 180 Pfam LSD1 zinc finger 88 112 IPR005735 -
Gso5g1456 180 Pfam LSD1 zinc finger 46 70 IPR005735 -
Gso5g1456 180 PANTHER LSD1-LIKE PROTEIN 1 178 - -
Gso5g1456 180 MobiDBLite consensus disorder prediction 130 147 - -
Gso5g1456 180 MobiDBLite consensus disorder prediction 124 147 - -
Gso5g1456 180 PANTHER PROTEIN LSD1 1 178 IPR040319 -
Gso5g1456 180 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 43 73 IPR005735 -
Gso5g1456 180 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 85 114 IPR005735 -
Gso5g1456 180 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 4 34 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1456 Gso-Chr5 38056438 38060374 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Gso5g1456 zf-LSD1 8.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1456 - - gmx:100776394 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1456 5 38056438 38060374 Gso8g1078 8 9972915 9977252 GST