Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1454 ATGAAACAGTTGAAATTGGCTGCAGAATCTCACGCCAAAGAGGATAATCCTTGTAGGCATAAACCAGAAATGGAAAACACACTTGAGTCTTCTGGCAGTCCACGGCATAGAAAGATATCAGCCAGATGGGATCCGGTTGAAGCATGCCGGCCTATAGTTGATGAAGCACCTGTGTTTTATCCAACTATTGAGGAGTTTGAAGACACACTTGGTTACATAGCTAAGATTCGCCCCCAAGCTGAACCTTATGGCATATGTAGGATTGTCCCTCCAGCTTGCTGGGTACCACCTTGCCCTCTTCAGGAGAAAGATTTATGGGAAAATGCAAAATTTCCCACTCGTATTCAGCTAATTGACTTGCTTCAGAACAGGGAACCCATGAGAAAGAAAATTAGGGGAAGGAAACGAAAACGTAGAAAGCAGTCAAAGATGGGCATGGGTATGAGAACTGCCAAATCAGGTTCTGAAGCTAATGTTGCTTCTGAGCCTGAGGAGAAGTTTGGATTCCAATCAGGGTCAGACTTCACACTTAAAGACTTTCAGCAATATGCTAATGTTTTTAAAGATTGCTACTTTGGATTGAATGATGCCAATGAATATGAAAAAGTTAGTGATAGTAGTCACCAGCAAAGATGGAAACCCTCTGTGGAGGAAATTGAAGGTGAATACTGGCGAATAATAGAGCAACCAACTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGATCACTTGGAAGTGGTTTTCCTAAGACATCATCCTTAACTAAGAATGAGTCAGATAGATATGCCCTGTCTGGTTGGAATCTGAATAACTTCCCGCGACTGCCAGGTTCTGCCTTATGTTTTGAAGGAAGTGATATCTCAGGAGTTGTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGCATGTTGAGGACCATCACCTCTATTCACTTAATTATCTGCACTGGGGTGACCCAAAAGTATGGTATGGAGTAGCTGGAAGCCATGCTCCAGGTCTGGAAGATGCAATGAGAAAGCACTTGCCTGATTTATTTGAAGAACAACCAAATCTACTCAATGAATTGGTGACTCAGTTATCTCCTTCAATTCTTAAATCTGAGGGGGTGCCTGTACATCGCACTATTCAGCATTCAGGGGAATTTGTTGTTACCTTTCCAAGGGCATACCACTGTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCTGTGAATGTGGCTCCTGTTGATTGGCTTGTGCATGGCCAGAATGCTGCCGAGCTTTACAGTTTGCAGTGCCGTAAGACTTCATTGTCTCATGACAAGTTATTATTTGGATGTGCTCAGGAAGCCATGCATGCCCTTGCAGAGCTAACTCTTCATGGAAAAGAAAATCTAAAATATATAAAATGGAGAAGTGCTTGTGGGAAAGATGGAGTTCTTACCAAGGCAGTTAAGACAAGGATAACTATGGAAAAGGAAAGGCTTGACTGTCTTCCAACTCATTTAAAGATGCTGAGGATGGACAGTAAATTTGATTTGTTTGAGGAAAGAGAATGCTTCTCTTGCTTCTATGATTTGCACCTATCTGCCATAGGTTGCAAGTGCTCTCCTGACTGTTATTCTTGTCTCAAACACTCAAATTTGTTTTGCTCATGTGAAATGGACAACAGGTTTATTCTGTTTCGTTATAATATGAATGAACTAAGTACATTGGTTGAAGCATTAGAAGGAGAATCACATGCCATTGAAGTGTGGTCAAATAGAAACTCTGGAATGGTTTCTGCTAATGCTGAGGATGCTTGCATTTATAAACAAGATGTGGAGAGTGCCATTTGTCAAACCCAGAGTTACAAAGAAGGGAAAAACTCAACTTGTGCAGGAACTAATGATAAGTCAAATTCAACTATACTTAGTAGTTCTTACAGCCACATTTCAGCAGAATTAGTCCACTCAGAGTTTCACCATGAAACTTTTAGTGCACCATATGGCACTAAAGACTGTCATAAAGACAATTTGAATGAAAAAGATTTGGTCATGGACAATAAAGTTACGGTGGAGAAAGGAGGTTCTGTGGATTTGAATATTGATGTTATGTCTGGTGAACCTGAAAATTATTTTCTGCATGCTGCTGATTACCATCATAATAAGGGTGTTCCATATGTGGAAAAAGTCAGCTTTGCAGAGGCTAGAAAAGAACAAGACAACATGGAACCTGGGGCTGATAGTATTGCTGGCAAAGAATTTTCATCTTGTTCAAGGGATGTTCAAAATTCTTGTACACTTGATGGTTATAAATTGTTTGGGGTGGATCTGCAGATGCATTCTGATTCAGGAGAGCAACTCAACAGTGTATCTAAAATGGGTGACGCCGAAACCTCCAATACAAGTATATCGTTGACAAACCAAAGCTTCTTAATGCAGAAGTTTGGTATTTCTGTAGAGCCTGTAAATTTGGGCTCTGTTATTTGTGGAAAGCTGTGGTGCAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGTCGTGTTAAGTTCTTTAGCATTCTTGATCCACCAAGAATTTGTAACTATCTTTCTGAAGTCTATGATGCTGGATTTCTTGGGCCTATTTTCAAGGTTACCATGGAAGAACTTCCAAATGAGGCTTTCACAAACACCTCAGCAGATAAGTGCTGGGAATCAGTTCTTGAAAGACTAAATCATGAAATCAAAAGGCAAAGGAGTCAAGGTGAAATAGAACTTCCTTCCTTGGAACTTCTGCAAAGCATTAACGGTCACAAAATGTTTGGATTCCTTTCACCATCCATTATTCAGGCCATTGAAGCTGAGGATCCCAATCATCAATGCGTCGAGTACTGGAATCACAAAGAAGTTGTCTCTGAATCTTCAGGCAGTGCCATTGATGACTGTAAGTTCAGTCATGGTTCAAGCAACTCCCTAGGTGATGCCAAGACCAAGCTTTTTGATGCTGGTTTGATAAGGCAGGAGCAAGATAGCATCATAGGAAGTTGTGATTCTTTTGAAGAGATGAAATTGGTGCTACAAGGATTCTTGAAAAAAGCAAGTTCTGATGAATTAAGTGCCATGCATAAGTTATTCAGCTCTGATGCACAGTTCACTAAGTGCAGAGCGGAATTTGTGTCGCTGATAGAAGAAATCCAGAAAGCTTGTGCATAA 3177 0.4076 MKQLKLAAESHAKEDNPCRHKPEMENTLESSGSPRHRKISARWDPVEACRPIVDEAPVFYPTIEEFEDTLGYIAKIRPQAEPYGICRIVPPACWVPPCPLQEKDLWENAKFPTRIQLIDLLQNREPMRKKIRGRKRKRRKQSKMGMGMRTAKSGSEANVASEPEEKFGFQSGSDFTLKDFQQYANVFKDCYFGLNDANEYEKVSDSSHQQRWKPSVEEIEGEYWRIIEQPTDEVEVYYGADLETGSLGSGFPKTSSLTKNESDRYALSGWNLNNFPRLPGSALCFEGSDISGVVVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVAGSHAPGLEDAMRKHLPDLFEEQPNLLNELVTQLSPSILKSEGVPVHRTIQHSGEFVVTFPRAYHCGFNCGFNCAEAVNVAPVDWLVHGQNAAELYSLQCRKTSLSHDKLLFGCAQEAMHALAELTLHGKENLKYIKWRSACGKDGVLTKAVKTRITMEKERLDCLPTHLKMLRMDSKFDLFEERECFSCFYDLHLSAIGCKCSPDCYSCLKHSNLFCSCEMDNRFILFRYNMNELSTLVEALEGESHAIEVWSNRNSGMVSANAEDACIYKQDVESAICQTQSYKEGKNSTCAGTNDKSNSTILSSSYSHISAELVHSEFHHETFSAPYGTKDCHKDNLNEKDLVMDNKVTVEKGGSVDLNIDVMSGEPENYFLHAADYHHNKGVPYVEKVSFAEARKEQDNMEPGADSIAGKEFSSCSRDVQNSCTLDGYKLFGVDLQMHSDSGEQLNSVSKMGDAETSNTSISLTNQSFLMQKFGISVEPVNLGSVICGKLWCSKHAIYPKGFKSRVKFFSILDPPRICNYLSEVYDAGFLGPIFKVTMEELPNEAFTNTSADKCWESVLERLNHEIKRQRSQGEIELPSLELLQSINGHKMFGFLSPSIIQAIEAEDPNHQCVEYWNHKEVVSESSGSAIDDCKFSHGSSNSLGDAKTKLFDAGLIRQEQDSIIGSCDSFEEMKLVLQGFLKKASSDELSAMHKLFSSDAQFTKCRAEFVSLIEEIQKACA* 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1454 1058 Pfam F/Y rich C-terminus 868 955 IPR003889 GO:0005634
Gso5g1454 1058 SUPERFAMILY Clavaminate synthase-like 260 451 - -
Gso5g1454 1058 MobiDBLite consensus disorder prediction 130 145 - -
Gso5g1454 1058 Pfam jmjN domain 57 90 IPR003349 -
Gso5g1454 1058 PANTHER LYSINE-SPECIFIC DEMETHYLASE 10 1057 - -
Gso5g1454 1058 SMART fyrn_3 820 864 IPR003888 GO:0005634
Gso5g1454 1058 SMART fyrc_3 870 965 IPR003889 GO:0005634
Gso5g1454 1058 SMART cupin_9 264 430 IPR003347 -
Gso5g1454 1058 ProSiteProfiles FYR domain FYRC motif profile. 866 956 IPR003889 GO:0005634
Gso5g1454 1058 Pfam C5HC2 zinc finger 520 571 IPR004198 -
Gso5g1454 1058 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Gso5g1454 1058 Gene3D - 812 950 - -
Gso5g1454 1058 ProSiteProfiles FYR domain FYRN motif profile. 806 864 IPR003888 GO:0005634
Gso5g1454 1058 MobiDBLite consensus disorder prediction 1 36 - -
Gso5g1454 1058 Pfam F/Y-rich N-terminus 817 861 IPR003888 GO:0005634
Gso5g1454 1058 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Gso5g1454 1058 MobiDBLite consensus disorder prediction 130 164 - -
Gso5g1454 1058 Gene3D Cupin 41 414 - -
Gso5g1454 1058 SMART JmjN_1 55 96 IPR003349 -
Gso5g1454 1058 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Gso5g1454 1058 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 10 1057 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1454 Gso-Chr5 38036626 38045324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1454 733 993 JUMONJI Transcription Factor Family AT1G30810 43.396 7.73e-55 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso5g1454 JmjC 1.5e-43 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1454 - - gmx:100784581 2133.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1454 5 38036626 38045324 Gso8g1076 8 9953072 9961560 GST