Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1452 ATGGCTTTGTTTCCTGAATTACCTGTTCATTTTGCCTTATTACTCCTTTTCCTCTTTCTTGAGCTACACAACCTTTTGATTGGTGTATCATCAGCCACTTTAAGCATCAGCTCAGACAGAGAAGCCTTGATCTCATTCAAATCTGAACTGAGTAATGACACTCTTAACCCTTTATCTTCTTGGAACCATAATTCATCCCCCTGCAACTGGACTGGTGTCCTCTGTGACAAGCATGGCCAAAGAGTGACAGGCCTTGATCTTTCAGGCTTGGGACTCTCAGGTCACTTAAGCCCTTATATTGGTAACCTCTCCTCTCTTCAGTCCCTCCAGTTGCAGAATAACCAACTCACAGGAGTGATTCCTGACCAAATTGGCAACCTATTCAATCTGAGACTTCTAAATATGAGCACTAACATGTTAGAAGGAAAGCTTCCTTCAAACACCACCCACCTGAAACAGCTCCGGATTCTTGATTTATCCTCAAACAAGATTGCCAGCAAGATTCCTGAGGACATCAGCAGCTTGCAAAAGCTTCAGGCTTTGAAACTGGGAAGGAATAGCCTCTATGGTGCAATACCAGCATCCATAGGGAACATTTCTTCTCTAAAAAATATAAGTTTTGGCACCAACTTTCTCACTGGCTGGATTCCCAGTGACTTGGGTAGGCTCCACAACTTGATTGAGCTTGATCTCACTCTCAACAATCTCACTGGGACTGTTCCACCTGTTATATACAACTTATCTTCCCTTGTCAACTTGGCCTTAGCTGCAAACTCTTTGTGGGGTGAGATTCCTCAGGATGTTGGTCAAAAACTTCCAAAACTCCTAGTGTTCAATTTCTGCTTCAATAAATTCACAGGTGGAATTCCAGGCTCATTGCACAACCTCACCAACATTCGGGTGATTCGCATGGCTTCCAACCTTTTAGAAGGAACAGTGCCACCTGGTTTGGGAAATCTCCCATTTCTTCGCATGTATAATATTGGCTATAACAGGATAGTGAGTTCAGGTGTGAGAGGTCTAGACTTCATCACTTCTTTGACAAACAGCACTCACCTGAACTTTCTGGCAATTGATGGCAACATGCTGGAAGGTGTAATTCCTGAAAGCATTGGCAATCTCTCCAAGGATCTCACAAAATTATACATGGGACAGAATCGTTTCAATGGAAGCATACCCTCCTCCATTGGTCGTCTAAGTGGCTTGAAGTTGTTAAACTTAAGCTACAATTCAATCTTTGGAGATATCCCAAATGAGTTAGGCCAGTTAGAGGGACTACAAGAGCTATCTCTGGCTGGAAATGAGATATCAGGAGGAATTCCAAACTCCCTTGGTAATCTCCTGAAGTTAAACCAGATTGATTTGTCAAAAAACAAACTTGTGGGGAGAATACCTACCAGTTTTGGGAATTTGCAAAACCTGCTTTACATGGACTTATCCAGCAACAAACTCGATGGAAGCATACCTATGGAAATACTCAATCTCCCAACTTTGAGCAATGTTTTGAACCTGTCTATGAACTTTTTGAGTGGACCAATACCACAAATAGGGAGATTGATTACTGTTGCCTCCATTGACTTTTCTAGTAACCAATTGTTTGGTGGCATCCCCAGCTCATTCAGCAATTGTCTCAGCTTAGAAAATCTGTTTTTGGCCCGGAATCAGCTTTCAGGTCCCATACCAAAGGCTCTTGGAGATGTGAAAGGCTTGGAAACTTTGGACTTGTCCTCCAACCAACTCTTTGGAGCCATACCTATTGAACTACAAAATCTACATGTCCTTAAGTTCTTAAACCTCTCGTACAATGATTTAGAAGGAGTAATTCCTAGTGGTGGAGTTTTCCAAAATCTCTCTGCTATTCATTTAGAAGGCAATAGAAAACTCTGCTTGTATTTCCCATGCATGCCTCATGGCCATGGAAGAAATGCAAGACTTTACATCATCATAGCCATCGTGTTAACATTAATACTATGTCTCACAATTGGCTTGCTACTGTATATAAAGAACAAAAGGGTGAAGGTAACAGCAACTGCAGCAACATCTGAACAGCTGAAACCTCATGTACCAATGGTCTCTTATGATGAACTTCGTCTGGCAACTGAGGAGTTCAGCCAGGAAAACCTATTAGGAGTTGGAAGCTTTGGCTCAGTTTATAAAGGCCATCTAAGTCATGGAGCTACTGTTGCAGTGAAAGTTCTTGACACCCTAAGAACTGGCTCTTTGAAGAGTTTCTTTGCAGAATGTGAGGCTATGAAGAACTCAAGGCATCGAAATTTGGTTAAGCTGATCACATCATGCTCTAGTGTTGACTTCAAAAACAATGATTTTCTGGCTCTGGTGTATGAGTACCTGTGCAATGGTAGCTTGGAAGATTGGATCAAGGGGAGGAGAAATCACGCAAACGGAAATGGGTTGAACCTTATGGAGAGACTGAACATAGCTATAGATGTTGCTTGTGCATTGGATTACCTGCACAATGATAGTGAAATCCCAGTTGTGCACTGTGATTTGAAGCCTAGCAACATTCTATTGGATGAAGACATGACAGCAAAGGTTGGAGACTTTGGATTGGCTAGGTCGCTGATTCAAAACTCAACAAATCAAGTTTCCATAAGCTCCACTCATGTCCTTAGGGGCTCAATTGGTTACATACCTCCAGAGTATGGATGGGGAGAGAAACCATCTGCAGCTGGAGATGTATACAGTTTTGGTATTGTGTTACTAGAGCTCTTCTCTGGTAAAAGCCCAACAGATGAGTGTTTCACAGGAGGCCTAAGTATAAGAAGATGGGTGCAATCAGCAATGAAAAACAAGACAGTGCAAGTCATTGACCCTCAGTTGCTGTCCCTCACTTTCCATGATGACCCTTCTGAGGGACCAAATCTGCAACTCAATTATTTGGATGCAACTGTAGGAGTTGGCATATCTTGCACTGCAGACAACCCAGATGAACGCATTGGCATTAGAGATGCTGTTCGCCAACTAAAAGCTGCTAGAGACTCTCTTTTGAAACTGTCTGATGAGAGTCCTAGAAGAGATACCGAGCGTTACTTCCATGTTTCAATAAAGTGA 3072 0.4238 MALFPELPVHFALLLLFLFLELHNLLIGVSSATLSISSDREALISFKSELSNDTLNPLSSWNHNSSPCNWTGVLCDKHGQRVTGLDLSGLGLSGHLSPYIGNLSSLQSLQLQNNQLTGVIPDQIGNLFNLRLLNMSTNMLEGKLPSNTTHLKQLRILDLSSNKIASKIPEDISSLQKLQALKLGRNSLYGAIPASIGNISSLKNISFGTNFLTGWIPSDLGRLHNLIELDLTLNNLTGTVPPVIYNLSSLVNLALAANSLWGEIPQDVGQKLPKLLVFNFCFNKFTGGIPGSLHNLTNIRVIRMASNLLEGTVPPGLGNLPFLRMYNIGYNRIVSSGVRGLDFITSLTNSTHLNFLAIDGNMLEGVIPESIGNLSKDLTKLYMGQNRFNGSIPSSIGRLSGLKLLNLSYNSIFGDIPNELGQLEGLQELSLAGNEISGGIPNSLGNLLKLNQIDLSKNKLVGRIPTSFGNLQNLLYMDLSSNKLDGSIPMEILNLPTLSNVLNLSMNFLSGPIPQIGRLITVASIDFSSNQLFGGIPSSFSNCLSLENLFLARNQLSGPIPKALGDVKGLETLDLSSNQLFGAIPIELQNLHVLKFLNLSYNDLEGVIPSGGVFQNLSAIHLEGNRKLCLYFPCMPHGHGRNARLYIIIAIVLTLILCLTIGLLLYIKNKRVKVTATAATSEQLKPHVPMVSYDELRLATEEFSQENLLGVGSFGSVYKGHLSHGATVAVKVLDTLRTGSLKSFFAECEAMKNSRHRNLVKLITSCSSVDFKNNDFLALVYEYLCNGSLEDWIKGRRNHANGNGLNLMERLNIAIDVACALDYLHNDSEIPVVHCDLKPSNILLDEDMTAKVGDFGLARSLIQNSTNQVSISSTHVLRGSIGYIPPEYGWGEKPSAAGDVYSFGIVLLELFSGKSPTDECFTGGLSIRRWVQSAMKNKTVQVIDPQLLSLTFHDDPSEGPNLQLNYLDATVGVGISCTADNPDERIGIRDAVRQLKAARDSLLKLSDESPRRDTERYFHVSIK* 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1452 1023 SMART LRR_typ_2 151 175 IPR003591 -
Gso5g1452 1023 SMART LRR_typ_2 296 320 IPR003591 -
Gso5g1452 1023 SMART LRR_typ_2 471 495 IPR003591 -
Gso5g1452 1023 SMART LRR_typ_2 399 423 IPR003591 -
Gso5g1452 1023 SMART LRR_typ_2 103 127 IPR003591 -
Gso5g1452 1023 SMART LRR_typ_2 567 590 IPR003591 -
Gso5g1452 1023 SMART LRR_typ_2 223 247 IPR003591 -
Gso5g1452 1023 SMART LRR_typ_2 591 616 IPR003591 -
Gso5g1452 1023 SMART LRR_sd22_2 567 593 - -
Gso5g1452 1023 SMART LRR_sd22_2 151 174 - -
Gso5g1452 1023 SMART LRR_sd22_2 447 473 - -
Gso5g1452 1023 SMART LRR_sd22_2 423 442 - -
Gso5g1452 1023 SMART LRR_sd22_2 223 249 - -
Gso5g1452 1023 ProSitePatterns Protein kinases ATP-binding region signature. 709 731 IPR017441 GO:0005524
Gso5g1452 1023 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Gso5g1452 1023 ProSiteProfiles Protein kinase domain profile. 703 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1452 1023 SUPERFAMILY Protein kinase-like (PK-like) 684 995 IPR011009 -
Gso5g1452 1023 Pfam Protein kinase domain 704 918 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1452 1023 SUPERFAMILY L domain-like 377 629 - -
Gso5g1452 1023 Coils Coil 988 1008 - -
Gso5g1452 1023 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 25 1002 - -
Gso5g1452 1023 SUPERFAMILY L domain-like 37 334 - -
Gso5g1452 1023 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672|GO:0006468
Gso5g1452 1023 Gene3D Ribonuclease Inhibitor 338 636 IPR032675 -
Gso5g1452 1023 Gene3D Ribonuclease Inhibitor 34 95 IPR032675 -
Gso5g1452 1023 Gene3D Ribonuclease Inhibitor 96 337 IPR032675 -
Gso5g1452 1023 SMART serkin_6 703 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1452 1023 Gene3D Transferase(Phosphotransferase) domain 1 784 1015 - -
Gso5g1452 1023 PANTHER OS04G0122200 PROTEIN 25 1002 - -
Gso5g1452 1023 Pfam Leucine rich repeat 378 436 IPR001611 GO:0005515
Gso5g1452 1023 Pfam Leucine rich repeat 523 580 IPR001611 GO:0005515
Gso5g1452 1023 Gene3D Phosphorylase Kinase; domain 1 673 783 - -
Gso5g1452 1023 ProSiteProfiles Leucine-rich repeat profile. 153 175 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1452 Gso-Chr5 38010405 38013761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1452 38 1011 Receptor kinase-like Gene Family AT3G47570 41.283 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gso5g1452 Pkinase 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1452 - - gmx:100783512 1946.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1452 5 38010405 38013761 Gso8g1073 8 9931885 9935836 GST