Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1447 ATGGCGAAAAGGAATGGTCCATGCTTCCACTGCGGCATTAAGTCTTCTCCACATTGGCGTAGTGGACCAGAAGACAAGTCAGTGTTGTGCAACGCATGTGGACTAAGATACACCAAATGGGGAAGCATTGGCCTTCAGAACTATTTTCCCAACCATTTTAAACCTGAGTATCTTGATAACCTTAAAAATCTAGAGGGTAGAAACAATGTTCTCCAAGGTTCAAGCTATGCTACAGATTCAAGTGGAAAAATCCATGTTATGTGGAATCCTTATGTTCCATCAAGGAAACGTTCACGCGTAGTACGGATGACAACATCAATCCAAAGGTTTCATGAACAACTTCTCATGATGTGGAAAAATGAAGAGAACTCAAATGATCAGTCATCCCAAGAATCAGAAGAGGTCTTATTGATTGATAACGTCAATAACTTCATACCTTGTAACGAAATAGGGCTTGGATGCATTCTTCTTAAACCAGAAGATGCTTCTGCATAG 495 0.404 MAKRNGPCFHCGIKSSPHWRSGPEDKSVLCNACGLRYTKWGSIGLQNYFPNHFKPEYLDNLKNLEGRNNVLQGSSYATDSSGKIHVMWNPYVPSRKRSRVVRMTTSIQRFHEQLLMMWKNEENSNDQSSQESEEVLLIDNVNNFIPCNEIGLGCILLKPEDASA* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1447 164 ProSiteProfiles GATA-type zinc finger domain profile. 8 37 IPR000679 GO:0006355|GO:0043565
Gso5g1447 164 Pfam GATA zinc finger 8 40 IPR000679 GO:0006355|GO:0043565
Gso5g1447 164 PANTHER GATA ZINC FINGER PROTEIN 13 164 - -
Gso5g1447 164 Gene3D - 1 66 IPR013088 GO:0006355|GO:0008270
Gso5g1447 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 52 - -
Gso5g1447 164 CDD ZnF_GATA 7 41 IPR000679 GO:0006355|GO:0043565
Gso5g1447 164 PANTHER OSJNBB0038F03.10 PROTEIN 13 164 IPR044589 -
Gso5g1447 164 SMART GATA_3 2 50 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1447 Gso-Chr5 37954227 37958082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1447 4 56 C2C2-Gata Transcription Factor Family AT5G47140 54.717 2.48e-14 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso5g1447 GATA 2.3e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1447 - - gmx:102667887 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso8g1528 8 14888153 14896503 Gso5g1447 5 37954227 37958082 PCT