Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1433 ATGGATTGTCATGGTGGTATTTCCCAAAGCTCTCCAAACAGGGAGTATGAAGGCCTTAATGGACCGGTTTTCTTACATGGTGACTTGGATCTGTTGATAATAGAAGCCAAGTCTCTTCCAAATTTAGATTTATCCAGTGAAACAATTAGAAAATGCATCACTATGGGCAACATGTGCCACCCTCCATTTATAAAAGGACTAAAGACACACTCTGGAAAAGACAAGATGATAACTAGTGACCCTTATGTTTCTGTATGCATTGCTGGGGCTACCATAGCTCAGACTAGAGTGATTGCTAACTGTGAGAACCCTTTGTGGGATGAGCAGTTTATTGTGCCTGTTGCTCACCCTGCTCAAAAACTTGAGTTCCTTGTGAAGGACAATGATATTCTTGGGGCTGAACTCATTGGAGTGGTGGAGATACCTGTTCAGAAGATAATTGCAGGAAATACTGTTAATGATTGGTTTCCCATCATTGGTCAGTACGGAAACTGCTTAAAACCTTATCCTGAATTGCATATTTCTGTTCAGTATAGGCAAATTGGAGTGAACCGTTCAGAAAGTATTAGTAGTGGGGATGGAAAAGCCTTAGGAGTTCCTAAAACATATTTCCCTCTCAGGAAAGGAGGGAGTGTGACTCTATATCAAGATGCACATTTACCTGATGGTATGCTACCTGAAATTACACTTGAGGGTGGAAAAGTGTTTCAGCATAATAAATGTTGGGAGGACATATGCCATGCAATTTTGGAAGCTCATCACCTGATATACATTATAGGATGGTCAGTTTACCACCCAGTGAGGCTGGTCAGAGAGGCAACAAAACCATTGCCTTCTGGGGGAGAGCTTTCACTTGGAGAGCTGTTGAAGTACAAGTCACAAGAAGGGCTCCGAGTGGTTATGCTGATTTGGGATGACAGAACTTCACATGACAAGTTTCTTTTGAAAACAGATGGTGTCATGCAGACTCATGATGAAGAAACTAAGAAGTTTTTCAAACATTCTACTGTTCATTGTGTGCTATCTCCACGCTATGCAAGCAATAAGCTCAGTATTTTCAAGCAACAGGTTGTGGGAACCCTCTTTACGCATCACCAGAAATGTGTTCTTGTAGACAGTCTAGGTTCTGGGAATAATAGGAAAATAACAGCTTTCATTGGTGGTTTGGATCTATGTGATGGTAGATATGATACACCGGAGCATCGGCTTTTTCGTGATCTAGATACAGTCTTTCATAATGATTTTCATAATCCTACATTTCAATTACATTCGAATTCATGTGCACCAAGGCAGCCATGGCATGACTTACATTGCAAAATTGAAGGTCCAGCAGCATATGATATATTGACCAATTTTGAACAAAGATGGAGGAAGGCCAAAAAATGGCGCGACTTCAGGCTCAAAAAGGTGACCAATTGGCATGATGACGCTTTGCTAAGGCTAGACCGGATTTCATGGATTGTCAAACCTTCTCCTTCTTCCAACGGCGATAAATCTGTTCATGTAACCGATGAAAATGATCCCGAGAGTTGGAATGTGCAGATATTTAGGTCCATAGATTCAGGATCTGTGAAGGGATTTCCTAAGGATGTTGACAAAGCTAAGGCTCAGAATCTTTTTTGTGGAAAAAATTTGAAAGTAGATCAAAGCATCCATACTGCTTATGTGAGAGCAATAAGATCCGCTGAGCACTTTGTATATATTGAGAATCAGTATTTTTTGGGCTCCTCCTATCATTGGCCTTCATATAAAAACAATGCAGGTGCTAACCACTTGGTTCCCATGGAGTTGGCTTTGAAAATTGCTGGTAAGATCGGTGCAAATGAACGTTTTTGTGTATATATAGTTATACCAATGTGGCCAGAGGGTGTTCCAACAAGTGCTGCTGTTCAAGAAATATTGTTCTGGCAGGGACAGACAATGTCTATGATGTACAAGATTGTAGCTGATGCCCTTGAAAAAGCAGGACTTTCTTATCAGTATCATCCACAAGATTATCTCAATTTTTACTGCCTTGGAAAGAGAGAACCACAATCCACAAATATTTCACCAACACCAAATCCATCTGAAAACCGCGCTTTGGTATCAGTTAAAAAATTCAGACGTTTTATGATTTATGTTCATGCCAAAGGAATGGTAGTTGATGACGAATACGTAATTATTGGATCAGCAAACATTAACCAGAGATCCTTAGATGGTTCAAGGGACACAGAAATAGCTATGGGTGCCTATCAACCAAAATATACATGGACAGAAAAGAATGCTCATCCACGTGGCCAGGTGTATGGATACAGAATGTCACTGTGGGCTGAGCACCTTGGCAGTCTTGATCATTGTTTTGCTGAACCTCACAACCTGGAATGTGTCAGACATGTCAACAAAATTGCCAAACGAAACTGGGACATATATGTGTCTGAGGAAGAGAATCGGATGAGGGGACACTTGATGCAATATCCAGTTAAGATCAGCAGGGATGGAAAAGTCAGTGCACTTGATGATTATGAATCCTTTCCTGATGTTGGTGGCAAAATTCTTGGATCACCAAATTCACTTCCGGATGCATTAACCACCTGA 2574 0.4083 MDCHGGISQSSPNREYEGLNGPVFLHGDLDLLIIEAKSLPNLDLSSETIRKCITMGNMCHPPFIKGLKTHSGKDKMITSDPYVSVCIAGATIAQTRVIANCENPLWDEQFIVPVAHPAQKLEFLVKDNDILGAELIGVVEIPVQKIIAGNTVNDWFPIIGQYGNCLKPYPELHISVQYRQIGVNRSESISSGDGKALGVPKTYFPLRKGGSVTLYQDAHLPDGMLPEITLEGGKVFQHNKCWEDICHAILEAHHLIYIIGWSVYHPVRLVREATKPLPSGGELSLGELLKYKSQEGLRVVMLIWDDRTSHDKFLLKTDGVMQTHDEETKKFFKHSTVHCVLSPRYASNKLSIFKQQVVGTLFTHHQKCVLVDSLGSGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVFHNDFHNPTFQLHSNSCAPRQPWHDLHCKIEGPAAYDILTNFEQRWRKAKKWRDFRLKKVTNWHDDALLRLDRISWIVKPSPSSNGDKSVHVTDENDPESWNVQIFRSIDSGSVKGFPKDVDKAKAQNLFCGKNLKVDQSIHTAYVRAIRSAEHFVYIENQYFLGSSYHWPSYKNNAGANHLVPMELALKIAGKIGANERFCVYIVIPMWPEGVPTSAAVQEILFWQGQTMSMMYKIVADALEKAGLSYQYHPQDYLNFYCLGKREPQSTNISPTPNPSENRALVSVKKFRRFMIYVHAKGMVVDDEYVIIGSANINQRSLDGSRDTEIAMGAYQPKYTWTEKNAHPRGQVYGYRMSLWAEHLGSLDHCFAEPHNLECVRHVNKIAKRNWDIYVSEEENRMRGHLMQYPVKISRDGKVSALDDYESFPDVGGKILGSPNSLPDALTT* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1433 857 CDD C2_plant_PLD 21 179 - -
Gso5g1433 857 Gene3D C2 domain 23 179 IPR035892 -
Gso5g1433 857 Gene3D Endonuclease Chain A 232 478 - -
Gso5g1433 857 ProSiteProfiles C2 domain profile. 6 156 IPR000008 -
Gso5g1433 857 Pfam Phospholipase D Active site motif 361 395 IPR001736 GO:0003824
Gso5g1433 857 Pfam Phospholipase D Active site motif 704 730 IPR001736 GO:0003824
Gso5g1433 857 PIRSF PLD_plant 17 857 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Gso5g1433 857 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 25 179 IPR035892 -
Gso5g1433 857 SUPERFAMILY Phospholipase D/nuclease 538 775 - -
Gso5g1433 857 Gene3D Endonuclease Chain A 518 753 - -
Gso5g1433 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 703 730 IPR001736 GO:0003824
Gso5g1433 857 SMART C2_3c 28 155 IPR000008 -
Gso5g1433 857 SMART pld_4 703 730 IPR001736 GO:0003824
Gso5g1433 857 SMART pld_4 360 395 IPR001736 GO:0003824
Gso5g1433 857 PANTHER PHOSPHOLIPASE D 23 857 IPR015679 -
Gso5g1433 857 Pfam C2 domain 27 158 IPR000008 -
Gso5g1433 857 Pfam Phospholipase D C terminal 777 847 IPR024632 -
Gso5g1433 857 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 360 395 IPR001736 GO:0003824
Gso5g1433 857 PANTHER PHOSPHOLIPASE D 23 857 - -
Gso5g1433 857 SUPERFAMILY Phospholipase D/nuclease 200 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1433 Gso-Chr5 37801104 37812769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1433 23 856 Phospholipase D Gene Family (Wang group) AT2G42010 54.398 0.0 929
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1433 K01115 - gmx:100779740 1780.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1433 5 37801104 37812769 Gso8g1056 8 9769424 9779352 GST