Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1429 ATGGAGATTCACTACAGTAACAGCTATTTCGAGAGGCGCCCCATCCTCAAGTCCAAGGCTGCCGCTGTCAAATGGGTCAAAGAATGGGTTCCCCAAGATCTTGTGACAACAGGAGGGAAGTGCATGATCTTAAAATGGGTAACAGAGGATACCTTGAAGACCTTGAAAGAAAAGGTAAAAGAGCCTTCAGTGCCAGAGCCAGAACCTGAGCCAACTACTGAAGTACTTTTTCTTTGCAGCTATGATGGCTGTGGAAAGACATTCATAGATGCTGGTGCATTGAGGAAACATTCTCACATCCATGGAGAGAGGCAGTATGTTTGTCACTACGATGGATGTGGAAAGAAATTTCTGGATAGCTCAAAGTTGAAAAGACATTTTCTCATTCATACAGGGGAGAGGGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCCTTCTCCCTGGATTTCAACTTAAGGTCTCACATGAAAACACATTCCCAAGAGAACTATCATATCTGCCCATATCCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAGAATGCATCCGTGGATGTGACAAAGTACACTACTCCCCCTTCAGAGAAGCAAACAAAAACTTCTAAACCATCTGGAGGGGCATATGGTTCTGCATCATCTGACCGTCCCTATGCATGTCCCTATGATGGGTGCGAAAAGGCATACATCCATGAATACAAGCTTAGACTCCATTTGAAGAGGGAGCATCCGGGGCTTATGGCTGATGAAAATGCAGAGCATGCTCAGGCTAATGTTGACAATGAAATGGATGAAGCAAGTGACCATGATGCCTATGTTGCGAAACGATCAAATGGTAAAATTCAGAAGCAGAGTAAGCCTAAACCAAACCTCAAGTTGCCTCCTTCCAAAATTGCAAAACGCAAACTGTCCACTCCCTCTTTAACTGTAAATAAAAATTCTTGGCCCGTGAAAGATGAACCTTTCGATGAAGAAGATAGCGAAGAAACAGAAGAGGATCGTGACAATGTTGAAGATGGTTGGAGATATGCAGGAGGAAACAATGAAGATGATGATGAGGAAACAGAATATGAAGACTGA 1116 0.4301 MEIHYSNSYFERRPILKSKAAAVKWVKEWVPQDLVTTGGKCMILKWVTEDTLKTLKEKVKEPSVPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYDGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRYAHEYKLKNHIASHHEKNASVDVTKYTTPPSEKQTKTSKPSGGAYGSASSDRPYACPYDGCEKAYIHEYKLRLHLKREHPGLMADENAEHAQANVDNEMDEASDHDAYVAKRSNGKIQKQSKPKPNLKLPPSKIAKRKLSTPSLTVNKNSWPVKDEPFDEEDSEETEEDRDNVEDGWRYAGGNNEDDDEETEYED* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1429 371 ProSitePatterns Zinc finger C2H2 type domain signature. 168 191 IPR013087 -
Gso5g1429 371 ProSitePatterns Zinc finger C2H2 type domain signature. 108 130 IPR013087 -
Gso5g1429 371 SMART c2h2final6 77 101 IPR013087 -
Gso5g1429 371 SMART c2h2final6 230 255 IPR013087 -
Gso5g1429 371 SMART c2h2final6 106 130 IPR013087 -
Gso5g1429 371 SMART c2h2final6 166 190 IPR013087 -
Gso5g1429 371 SMART c2h2final6 136 160 IPR013087 -
Gso5g1429 371 Gene3D Classic Zinc Finger 203 272 - -
Gso5g1429 371 Gene3D Classic Zinc Finger 163 195 - -
Gso5g1429 371 Gene3D Classic Zinc Finger 103 133 - -
Gso5g1429 371 PANTHER BNAA03G13270D PROTEIN 4 370 - -
Gso5g1429 371 MobiDBLite consensus disorder prediction 192 227 - -
Gso5g1429 371 Gene3D Classic Zinc Finger 77 102 - -
Gso5g1429 371 Gene3D Classic Zinc Finger 134 161 - -
Gso5g1429 371 ProSitePatterns Zinc finger C2H2 type domain signature. 232 255 IPR013087 -
Gso5g1429 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 136 165 IPR013087 -
Gso5g1429 371 ProSitePatterns Zinc finger C2H2 type domain signature. 79 101 IPR013087 -
Gso5g1429 371 SUPERFAMILY beta-beta-alpha zinc fingers 225 253 IPR036236 -
Gso5g1429 371 MobiDBLite consensus disorder prediction 288 371 - -
Gso5g1429 371 MobiDBLite consensus disorder prediction 198 221 - -
Gso5g1429 371 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 4 370 - -
Gso5g1429 371 ProSitePatterns Zinc finger C2H2 type domain signature. 138 160 IPR013087 -
Gso5g1429 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 106 IPR013087 -
Gso5g1429 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 195 IPR013087 -
Gso5g1429 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 135 IPR013087 -
Gso5g1429 371 SUPERFAMILY beta-beta-alpha zinc fingers 117 170 IPR036236 -
Gso5g1429 371 Pfam Zinc finger, C2H2 type 166 190 IPR013087 -
Gso5g1429 371 Pfam Zinc finger, C2H2 type 136 160 IPR013087 -
Gso5g1429 371 MobiDBLite consensus disorder prediction 333 347 - -
Gso5g1429 371 SUPERFAMILY beta-beta-alpha zinc fingers 80 130 IPR036236 -
Gso5g1429 371 ProSiteProfiles Zinc finger C2H2 type domain profile. 230 260 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1429 Gso-Chr5 37772320 37776977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1429 10 356 C2H2 Transcription Factor Family AT4G06634 64.754 7.99e-141 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso5g1429 zf-C2H2 0.0089 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1429 - - gmx:100811480 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1429 5 37772320 37776977 Gso8g1052 8 9741478 9745738 GST