Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1420 ATGGGTAATTGCTGGTGTAGGTGGAAATCATCAGAGTATAGAGTCTCATCCAATGTAAAGTCAGAACAAAACCAGGGAACCAAACAAAGGCATGATGATAGTAAGTTACCATCGAATCCTGAAGAAGTAGAAGATCTACGGCGTGACACAGCTGCAAATCCTTTGATAGCATTCACTTATGATGAGTTAAAGATAGTCACAGCAAATTTTAGGCCAGATCGTGTGTTGGGGGGAGGAGGATTTGGAAGTGTTTACAAAGGGTTTATTTCTGAGGAGTTAATAAGGCAAGGGCTTCCTACCCTTGCTGTAGCTGTTAAGGTTCATGATGGTGACAACAGTCATCAAGGGCACAGAGAATGGCTGGCAGAAGTCATATTTTTGGGGCAGCTTTCACATCCAAATCTAGTCAAGCTAATTGGATATTGCTGTGAAGACGAGCATAGGGTGCTAATATATGAGTACATGTCCCGGGGAAGTGTGGAACACAACTTGTTCTCAAAAATTTTGCTTCCCATGCCATGGTCCACAAGAATGAAGATTGCGTTTGGCGCTGCGAAGGGACTTGCATTTCTTCATGAAGCAGATAAACCTGTCATCTATCGAGATTTTAAGACATCAAATATTTTATTGGACCAGGACTACAATGCAAAACTTTCGGACTTTGGCCTCGCTAAGGATGGACCAGTTGGAGACAAATCTCATGTTTCTACTCGAGTAATGGGAACATATGGTTATGCCGCACCTGAATACATAATGACAGGTCATCTGACTCCTAGAAGTGATGTTTACAGTTTTGGTGTTGTTCTTCTTGAACTTCTCACTGGAAGAAAATCTTTAGACAAGTTAAGACCTGCTAGAGAGCAGAACCTTGCAGAATGGGCTCTTCCTTTGCTGAAGGAAAAGAAGAAATTTCTAAACATTATAGATCCAAGGCTGGATGGTGATTATCCAATTAAAGCAGTCCACAAGGCTGCAATGCTTGCATATCATTGCTTGAACCGCAACCCAAAAGCAAGGCCTCTAATGCGAGATATTGTAGACTCGTTGGAGCCTTTGCAGGCACACACAGAGGTTCCTATTGGAAAAACATTGACCATAATCAGTGAGGTTCCTGAATCTGGTTTGAAAATGAAAGATGAAGCAAAATGA 1149 0.4186 MGNCWCRWKSSEYRVSSNVKSEQNQGTKQRHDDSKLPSNPEEVEDLRRDTAANPLIAFTYDELKIVTANFRPDRVLGGGGFGSVYKGFISEELIRQGLPTLAVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLIGYCCEDEHRVLIYEYMSRGSVEHNLFSKILLPMPWSTRMKIAFGAAKGLAFLHEADKPVIYRDFKTSNILLDQDYNAKLSDFGLAKDGPVGDKSHVSTRVMGTYGYAAPEYIMTGHLTPRSDVYSFGVVLLELLTGRKSLDKLRPAREQNLAEWALPLLKEKKKFLNIIDPRLDGDYPIKAVHKAAMLAYHCLNRNPKARPLMRDIVDSLEPLQAHTEVPIGKTLTIISEVPESGLKMKDEAK* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1420 382 Pfam Protein tyrosine and serine/threonine kinase 73 349 IPR001245 GO:0004672|GO:0006468
Gso5g1420 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Gso5g1420 382 Gene3D Phosphorylase Kinase; domain 1 32 154 - -
Gso5g1420 382 PANTHER OS01G0588500 PROTEIN-RELATED 10 362 - -
Gso5g1420 382 ProSitePatterns Protein kinases ATP-binding region signature. 76 106 IPR017441 GO:0005524
Gso5g1420 382 MobiDBLite consensus disorder prediction 15 46 - -
Gso5g1420 382 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL16-RELATED 10 362 - -
Gso5g1420 382 Gene3D Transferase(Phosphotransferase) domain 1 155 364 - -
Gso5g1420 382 MobiDBLite consensus disorder prediction 25 46 - -
Gso5g1420 382 CDD STKc_IRAK 76 352 - -
Gso5g1420 382 ProSiteProfiles Protein kinase domain profile. 70 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1420 382 SUPERFAMILY Protein kinase-like (PK-like) 45 349 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1420 Gso-Chr5 37642314 37649878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1420 3 349 Glycoside Hydrolase AT3G07070 48.056 3.26e-106 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso5g1420 PK_Tyr_Ser-Thr 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1420 - - gmx:100808795 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1420 5 37642314 37649878 Gso8g1040 8 9596957 9603715 GST