Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1417 ATGGCACTTTGTATGCAGAGTCAGCAGAGAGATTCAGCATCAAACAAGCTGCTCATGGATTGTGGCAAGTATGTGAGGTACACACCTGAACAGGTGGAGGCTTTGGAGAGGGTGTATGTTGAATGTCCAAAGCCTAGTTCTTCCAGAAGGCAACAAATCATTAGGGAGTGTCCACTCCTTGCTAACATTGAAACAAAGCAGATCAAAGTGTGGTTCCAGAATCGCAGATGTCGTGAAAAGCAGCGGAAGGAAGCCTCTCGTCTGCAGACAGTGAATAGAAAGCTGTCTTCAATGAACAAGTTGTTAATGGAAGAGAACGACCGACTGCAGAAGCAGGTCTCACAGTTGGTTTATGATAATGGATTCATGAAACAACAAATACATACTGCATCTGCTACTACTACTACTACTACTGACAATAGCTGTGAGTCTGTGGTAGTGAGTGGTCAACACCAACCGCAAAACCCCAAAACTCAGCATCCCCAGTGGGATGCCAACAACCCAGCTGGTCTTCTTGCTATTGCTCAGGAGACCCTAGTGGAGTTCCTTTCCAAAGCTACTGGAACTGCTGTCAACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATTGTTGCTGTTTCCCGCAACTGTAGTGGCGTAGCGGCAAGAGCCTGTGGCCTTGTGAGCCTAGAGCCCACAAAGGTTGCCGAGATTCTCAAAGATCGTCCATCATGGTATCGTGACTGTCGATGCCTCAATGTATTGAGTGTAGTCTCCGCAGGGAATGGGGGCACAATAGAGCTTATGTACATGCAGACATATGCACCAACAACATTGGCAGCTGCAAGAGACTTCTGGACTCTGAGATACACTACTAGTTTGGAAGATGGAAGTCTTGTGATTTGTGAGAGGTCCTTGACTTCTTCAACTGGTGGCCCCACAGGGCCAGCTGCTTCAAACTTCATACGAGCTGAAATGCTTCCCAGTGGCTATCTAATTAGATCCTGTGAGGGTGGTGGATCTATCATTCACATTGTTGATCATGTGGATTTAGATGTTTGGAGTGTTCCTGAAGTACTTAGACCCCTCTATGAATCACCAAAATTCTTGGCTCAGAAATTGACTACTGCTGCATTGCGACATGCAAGACAAATTGCACAGGAATCAAGTGGAGATGTTCATTATGGTGGGGGTCGTCAACCTGCTGTCTTGAGGACATTTAGTCAAAGGCTTTGCAAAGGGTTCAATGATGCTGTCAACGGGTTTGTGGATGATGGTTGGTCACTGATGGGTAATGATGGGGTGGAAGATGTGACCATAGCCATAAACTCGTCTCCCAACAAGTTTTTCGGTTCCCATTACAATACATCAATGCTTCCAGCATTTGGAGGTGGGGTCATGTGTGCCAAGGCATCAATGCTGCTACAGAATGTTCCTCCTGCTTTGCTTGTTCGTTTTCTGAGGGAGCATCGTTCAGAGTGGGCTAATTATGAAGTTGATGCATACTCTTCTGCATGTCTCAAAGCTAGTCCTTATGCAGTTCCTTGTGCAAGACCTAGTGGTTTCCCAAGCAGCCATGTCATTATACCACTTGCTCATACTATTGAGCATGAGGAGTTCTTGGAGGTAGTTCGTATTGAGGGTAATGCATTTCCCCCTGATGATGTAGCTTGGGCATGTGATATGTATCTAATGCAGCTGTGCAGTGGAATTGATGAAAATGCAATTGGAGCGTGTGCACAGCTTGTGTTTGCACCTATTGATGAATCATTTGCAGATGATGCTCTCTTACTGCCTTCTGGTTTCCGTATCATACCATTGGATCCTAAAACAGATGGTTTGGCTTCAACTAGGACATTGGACTTAGCATCAACACTGGAAACAGGATCTGGTAATGCCCGCTCAGCTGGTGAAAGTGACTCGAATAACTACAACCTTAGGTCGGTCCTCACAATTGCATTCCAATTTACCTTTGAGAACCATTTGCGGGACAATGTGGCTGTTATGGCTCGCCAGTATGTGCGTAATGTTGTGCGATCTGTTCAGAGGGTTGCCATGGCAATTGCTCCCTCTAGGCTCAGTACACAGTTGGGGCCAAAGTCATTTCCTGGTCCACCAGAGGCTCTTACCTTAGCAAGATGGATCTGCAGAAGCTACAGGCTCCACACCTGCACAGAGCTTTTCAGCGTTGAGTCCACATCTGGTGATGCAATCTTGAAACAACTTTGGCACCATCCAGATGCAATATTGTGCTGTTCTGTAAAAACAGATGCATCTCCGGTGTTCACCTTTGCAAACCAAGCTGGACTTGACATGCTTGAAACCACTCTTGTTGCTCTTCAAGACATAATGCTGGATAAAGTTCTTGATGAAGCTGGCAGGAAGGTTCTCTGCATTGAGTTCTCCAAGATAATGCAACAGGGATTTGCATATCTGCCAGCAGGAATATGTGTATCAAGTATGAATCGACCAGTGTCTTATGAGCAGGCCATTGCATGGAAAGTTCTCGATGATGATGATTCCAATCACTGCCTTGCCTTCGTATTCATGAACTGGTCTTTTGTCTGA 2562 0.4594 MALCMQSQQRDSASNKLLMDCGKYVRYTPEQVEALERVYVECPKPSSSRRQQIIRECPLLANIETKQIKVWFQNRRCREKQRKEASRLQTVNRKLSSMNKLLMEENDRLQKQVSQLVYDNGFMKQQIHTASATTTTTTDNSCESVVVSGQHQPQNPKTQHPQWDANNPAGLLAIAQETLVEFLSKATGTAVNWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPTKVAEILKDRPSWYRDCRCLNVLSVVSAGNGGTIELMYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPTGPAASNFIRAEMLPSGYLIRSCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESPKFLAQKLTTAALRHARQIAQESSGDVHYGGGRQPAVLRTFSQRLCKGFNDAVNGFVDDGWSLMGNDGVEDVTIAINSSPNKFFGSHYNTSMLPAFGGGVMCAKASMLLQNVPPALLVRFLREHRSEWANYEVDAYSSACLKASPYAVPCARPSGFPSSHVIIPLAHTIEHEEFLEVVRIEGNAFPPDDVAWACDMYLMQLCSGIDENAIGACAQLVFAPIDESFADDALLLPSGFRIIPLDPKTDGLASTRTLDLASTLETGSGNARSAGESDSNNYNLRSVLTIAFQFTFENHLRDNVAVMARQYVRNVVRSVQRVAMAIAPSRLSTQLGPKSFPGPPEALTLARWICRSYRLHTCTELFSVESTSGDAILKQLWHHPDAILCCSVKTDASPVFTFANQAGLDMLETTLVALQDIMLDKVLDEAGRKVLCIEFSKIMQQGFAYLPAGICVSSMNRPVSYEQAIAWKVLDDDDSNHCLAFVFMNWSFV* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1417 853 ProSiteProfiles START domain profile. 164 364 IPR002913 GO:0008289
Gso5g1417 853 Gene3D - 19 89 - -
Gso5g1417 853 CDD bZIP 75 114 - -
Gso5g1417 853 CDD homeodomain 23 83 IPR001356 GO:0003677
Gso5g1417 853 Pfam START domain 174 382 IPR002913 GO:0008289
Gso5g1417 853 SUPERFAMILY Bet v1-like 174 385 - -
Gso5g1417 853 Coils Coil 92 112 - -
Gso5g1417 853 SMART HOX_1 20 86 IPR001356 GO:0003677
Gso5g1417 853 Pfam Homeodomain 24 81 IPR001356 GO:0003677
Gso5g1417 853 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 8 853 IPR044830 GO:0003700
Gso5g1417 853 CDD START_ArGLABRA2_like 168 384 - -
Gso5g1417 853 SUPERFAMILY Homeodomain-like 23 85 IPR009057 -
Gso5g1417 853 Pfam MEKHLA domain 708 852 IPR013978 -
Gso5g1417 853 ProSiteProfiles 'Homeobox' domain profile. 26 82 IPR001356 GO:0003677
Gso5g1417 853 SMART START_1 173 383 IPR002913 GO:0008289
Gso5g1417 853 Gene3D - 207 389 IPR023393 -
Gso5g1417 853 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 8 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1417 Gso-Chr5 37612927 37619613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1417 19 853 Homeobox Transcription Factor Family AT2G34710 76.520 0.0 1331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso5g1417 START 4.1e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1417 K09338 - gmx:100806322 1708.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1417 5 37612927 37619613 Gso8g1038 8 9570777 9576706 GST