Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1414 ATGGTTTGGACAGTGTTACGTGCTTCACGAAACATGACCTCTGCTCACGACCTTACTGATAATGAAGATGATGGACAGCAGCAGTCAGAATCACCAATGCAGCCCCCATCTGTAAATGGAATATCTGATCCAGGTATTAGTACCCAGAATGTCAATGTACAGTATGCAGCACCTGGCCAGCTTGGAACTGGGCATGCAATGGTACCACATGTGTATCCATATCCAGATCCTTACTATAGAAGCATCTTTGCTCCCTATGATACACAACCTTATCCCCCACAAGCCTATAGTGGGCAGCCAATGGTCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGTGTTCCTCTGCCAACTGATGCAGTTGAGGAGCCTGTGTTTGTCAATGCAAAACAATATCACGGTATATTAAGACGTAGACAATACCGTGCGAAAGCTGAATCAGAAAATAAAGTTATAAGGAATAGGAAGCCATACTTGCATGAATCTCGACACAAGCATGCACTGACAAGACCAAGAGGATGTGGTGGTCGGTTTCTGAATTCAAAGAAAGACAAGAATCAGAATGATGATGTGGCATCAGCTGACAAATCACAATCCAATATCAATATCAATTCTAATAAAAATGATCAAACTTCATCAGATAGGGCATCCTAA 654 0.4251 MVWTVLRASRNMTSAHDLTDNEDDGQQQSESPMQPPSVNGISDPGISTQNVNVQYAAPGQLGTGHAMVPHVYPYPDPYYRSIFAPYDTQPYPPQAYSGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQYRAKAESENKVIRNRKPYLHESRHKHALTRPRGCGGRFLNSKKDKNQNDDVASADKSQSNININSNKNDQTSSDRAS* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1414 217 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 12 200 IPR001289 GO:0003700|GO:0006355
Gso5g1414 217 MobiDBLite consensus disorder prediction 177 191 - -
Gso5g1414 217 MobiDBLite consensus disorder prediction 157 171 - -
Gso5g1414 217 MobiDBLite consensus disorder prediction 192 217 - -
Gso5g1414 217 MobiDBLite consensus disorder prediction 144 217 - -
Gso5g1414 217 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 123 178 IPR001289 GO:0003700|GO:0006355
Gso5g1414 217 PRINTS CCAAT-binding transcription factor subunit B signature 124 146 IPR001289 GO:0003700|GO:0006355
Gso5g1414 217 PRINTS CCAAT-binding transcription factor subunit B signature 155 178 IPR001289 GO:0003700|GO:0006355
Gso5g1414 217 MobiDBLite consensus disorder prediction 25 48 - -
Gso5g1414 217 MobiDBLite consensus disorder prediction 13 48 - -
Gso5g1414 217 ProSiteProfiles NF-YA/HAP2 family profile. 121 181 IPR001289 GO:0003700|GO:0006355
Gso5g1414 217 SMART cbf3 120 181 IPR001289 GO:0003700|GO:0006355
Gso5g1414 217 Gene3D - 121 182 - -
Gso5g1414 217 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 12 200 - -
Gso5g1414 217 ProSitePatterns NF-YA/HAP2 subunit signature. 126 146 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1414 Gso-Chr5 37583793 37588932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1414 13 217 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.556 5.08e-70 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gso5g1414 CBFB_NFYA 2.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1414 K08064 - gmx:100805791 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1414 5 37583793 37588932 Gso8g1036 8 9546929 9551023 GST