Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1412 ATGATTGGCAGGTTTCTTACAGGTAAAAGAAGAATGAAGGATTTATTGCTTCAAAAAGATAATCGCTTTTGTGCTGATTGCAATGCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTTGTATGCTTAAAATGTTGTGGTGTGCACAGAAGTCTTGGCTCTCAAATATCAAAGGGGTGCATTATTTTCCTTGGGACATTATTTTCTTACTTTCAGGTTTTGTCTGTGACATTGGATGAATGGTCAAGTGATGAAATAGATGCAATGATTGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTATTTTCCCGAAGGATATACAAAACCTGGACCAGATGCCAGTCATGAGCAGCGTGCGAAATTCATCCGGTTAAAGTATGAGCGTCAAGAATTTTTGAAACCTAGTTTGCGCATTGTGTCAGGAAAAAGCAATCCCCCATCAAGTATATCCAAAGGGGTTAAGGATAGTTTTCGAATTACTAGTGATTCACAGCATATGGAAGGAATGGTAGAATTTATTGGAATGTTAAAGGTGAAAGTGATCAAAGGCACAGATTTAGCTGTCAGAGATATGATGACAAGTGATCCATATGTTATCTTGAAACTTGGCCAACAGACTGTTCAGACAACTGTAATAAAGAGTAATTTGAATCCAGTCTGGAATGAGGAACTTATGCTGTCTGTTCCTCAGCAATTTGGAATATTGAATTTGAATGTATTTGATTATGACTTGTTTTCGGCTGATGACATAATGGGGGAAGCAGATATTGATCTTCAGCCGCTGATAACATCCGCAATAGCATACGGAGATGCTAGAATGTTTGATGATATGCAGATAGGAAAATGGCTGAAATCCCAAGACAATGCGCTTATATATGATAGCACAGTTAATATTGTTGATGGTAAGGTTAAACAAGACATGTCAATCAAGCTCCAGAACGTTGAATCTGGAGAATTAGACTTAGAACTCGAATGGATACCTCTTGATTATTAG 1011 0.3769 MIGRFLTGKRRMKDLLLQKDNRFCADCNAPDPKWASANIGVFVCLKCCGVHRSLGSQISKGCIIFLGTLFSYFQVLSVTLDEWSSDEIDAMIEVGGNSSANSIYEAYFPEGYTKPGPDASHEQRAKFIRLKYERQEFLKPSLRIVSGKSNPPSSISKGVKDSFRITSDSQHMEGMVEFIGMLKVKVIKGTDLAVRDMMTSDPYVILKLGQQTVQTTVIKSNLNPVWNEELMLSVPQQFGILNLNVFDYDLFSADDIMGEADIDLQPLITSAIAYGDARMFDDMQIGKWLKSQDNALIYDSTVNIVDGKVKQDMSIKLQNVESGELDLELEWIPLDY* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1412 336 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 336 IPR044518 GO:0005096|GO:0005543
Gso5g1412 336 Pfam C2 domain 181 270 IPR000008 -
Gso5g1412 336 SUPERFAMILY ArfGap/RecO-like zinc finger 9 140 IPR037278 -
Gso5g1412 336 SMART arf_gap_3 9 145 IPR001164 GO:0005096
Gso5g1412 336 Gene3D Arf GTPase activating protein 6 143 IPR038508 -
Gso5g1412 336 Gene3D C2 domain 178 335 IPR035892 -
Gso5g1412 336 PRINTS HIV Rev interacting protein signature 21 40 IPR001164 GO:0005096
Gso5g1412 336 PRINTS HIV Rev interacting protein signature 40 57 IPR001164 GO:0005096
Gso5g1412 336 PRINTS HIV Rev interacting protein signature 75 96 IPR001164 GO:0005096
Gso5g1412 336 Pfam Putative GTPase activating protein for Arf 10 139 IPR001164 GO:0005096
Gso5g1412 336 CDD ArfGap 12 132 - -
Gso5g1412 336 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 176 274 IPR035892 -
Gso5g1412 336 ProSiteProfiles C2 domain profile. 159 277 IPR000008 -
Gso5g1412 336 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 336 - -
Gso5g1412 336 SMART C2_3c 181 276 IPR000008 -
Gso5g1412 336 ProSiteProfiles ARF GTPase-activating proteins domain profile. 9 137 IPR001164 GO:0005096
Gso5g1412 336 CDD C2_ArfGAP 179 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1412 Gso-Chr5 37571518 37575228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1412 2 335 C2H2 Transcription Factor Family AT4G21160 68.513 1.51e-176 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1412 K12486 - gmx:100777084 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1412 5 37571518 37575228 Gso8g1034 8 9536833 9540423 GST