Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1393 ATGCCTCGTAAAGTAAATTACGGACTCGATTACGACGACGATTTCTATGATGATGATTATGATGACTATGCTTATGATGATGCCGATGCAGAAGACTATGCAGAAGGACATGATACAAAGCAAGAGACCATTAAGCCTGGGCTTTGGCAATGCTCCATTTGCACTTATGACAACGATGAGAGTATGACTTTTTGTGATATTTGTGGTGTTGTACGCCGTTCCTTGGTTAACACTGGAACTTCCAACAGTAACAAAACAGTTGAAGACATAAGCAAAAGTCCTGGAGCATCCAAGTTGGCCAGGTCTCTTTTTCAATCATTACAACAACAGATTCCCAAAGAGATTGTATTATTTCCAAAGCCAGATGATGGTTTTCTGACAGATGACAGTAACTTCTACAAGCTTGAAAATGTCCGAGGAGAATTTCATGAAATTCATAAGGCTTTTAGTACTCAAAGCCATCCACATTTAAACATAGATCCTTTCAAGTTTGATGTTCCATCCCCAGATGATGTGGTTTATACTGGCCTACGTTCTTCCAAAACGGGTTTGAAAGACAAAGCTACAAACACTAAAAGTTCTCAGCTTTCATCAAGCATCAGAGAGAAGAATGAACTTTCTGTACAATCAAATGCTGAAAGTTCTGACAACTTATCATCCTTAACGCGAAAGAGCAAACAGGATAGTTCAGCTAAGAGCAAGCTTTCCAAAAATGTAGCAATTGATCTACAAACAAGTGGTAAAACTTCAAACAGCTTGCCAGAATCTTTGTCAAAAGACAAAGGTAACAATATTAATAAAATAAATTCTTTGAAAAATGGTACAATTGATATTCAATCAAGCAAAGAAAAGTCAGGTAGTTTGTCTGCACTGTCAAAAGTCAAGGAAAGTGATAACATTAGTTTCTCTTCTATCAAAGATGGAAAACCTGAAAGTATTTCCAGCAGTTTCAACAATATGGCTCTCAATGTAAGATCTGGAAATTCATCTGGAAATTCTGATAATACTAATGCTAAGGGAACTCGCTCACATGTTTCTTATAAGCCAGAAAAATGGATGCTCCCTCAACAAGCTGAAGATACATTGACTCAGCTGAATCTTGCAATTGTTGGCCATGTTGATTCTGGAAAATCAACTCTATCTGGTAGGTTACTGCACCTATTGGGACGGATTTCCCAGAAAGAAATGCACAAATATGAAAAGGAGGCCAAGTTACAGGGCAAGGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGAGAAAGGGGGATAACTATGACAGTGGCTGTTGCTTATTTTGACACCAAGAGATATCATGTTGTTGTGCTCGACTCCCCTGGCCATAAAGATTTTGTCCCAAACATGATATCTGGGGCAACACAAGCTGATGCTGCAATTCTTGTTATAGATGCCTCACTTGGTTCATTTGAAGCTGGTATGGATGGCAGCAAAGGGCAAACAAGGGAGCATGCACAACTTATCAGAAGCTTTGGTGTTGATCGGGTTATAGTTGCTGTAAATAAGATGGATGCTGTTGTGTACTCCAAAGATCGATTTGATTTTATAAGGCAGCAGCTGGGAGTTTTTCTCCACTCTTGTGGTTTCAAAGATTCTTCGCTATCTTGGATTCCCATGAGTGCTATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGATGCCCGTTTAAAAAACTGGTATGGTGGACCTTATCTATTAGATGCAATTGACTCTCTCCAACCTCCTACTAGAGAATTCTCAAAACCTCTACTAATGCCAGTATGTGATGTCATCAAATCAACTACACTTGGGCAGGTGTCTGCCTCTGGTAAACTAGAAGCAGGAGCTCTTCGGAGTGGATCAAAGGTCTTGGTTATGCCTTCAGCTGTTGTGGGAACAGTACGTTCATTGGAGCGTGACTCTAATGCTTGTACTGTTGCAAGAGCTGGAGATAATGTAGCTGTAATGTTGCAAGGTGTCGATGGAAATCATGTGATGGCAGGAGATGTATTATGCCATCCTGACTTTCCTGTTGCAGTTGCTAAGCATTTGGAGTTGAAAGTGCTAGTGTTGGATGGTGCAAGTCCCATATTGGTGGGCACACAGTTAGAGTTTCACATACACCATGCGAAGGAACCTGGTAGAGTTTCAAGAATATTATCAGTACTTGATCCCAAGACGGGTAAGGTGACCAAAAAGTCACCCCGCTGTCTCACTGCAAAGCAAAGTGCAGTAATTGAGGTGATTTTGAATGAGACAGTCTGTGTGGTAGAGTTCTCTAGTTGTAAAGCTCTTGGAAGGGTGTCCCTAAGATCAATGGGAAGAACGATTGCTGTTGGAGTTGTGACAAGAATAATTGAAGAACAAGGTTAA 2382 0.4043 MPRKVNYGLDYDDDFYDDDYDDYAYDDADAEDYAEGHDTKQETIKPGLWQCSICTYDNDESMTFCDICGVVRRSLVNTGTSNSNKTVEDISKSPGASKLARSLFQSLQQQIPKEIVLFPKPDDGFLTDDSNFYKLENVRGEFHEIHKAFSTQSHPHLNIDPFKFDVPSPDDVVYTGLRSSKTGLKDKATNTKSSQLSSSIREKNELSVQSNAESSDNLSSLTRKSKQDSSAKSKLSKNVAIDLQTSGKTSNSLPESLSKDKGNNINKINSLKNGTIDIQSSKEKSGSLSALSKVKESDNISFSSIKDGKPESISSSFNNMALNVRSGNSSGNSDNTNAKGTRSHVSYKPEKWMLPQQAEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKRYHVVVLDSPGHKDFVPNMISGATQADAAILVIDASLGSFEAGMDGSKGQTREHAQLIRSFGVDRVIVAVNKMDAVVYSKDRFDFIRQQLGVFLHSCGFKDSSLSWIPMSAMENQNLVASPSDARLKNWYGGPYLLDAIDSLQPPTREFSKPLLMPVCDVIKSTTLGQVSASGKLEAGALRSGSKVLVMPSAVVGTVRSLERDSNACTVARAGDNVAVMLQGVDGNHVMAGDVLCHPDFPVAVAKHLELKVLVLDGASPILVGTQLEFHIHHAKEPGRVSRILSVLDPKTGKVTKKSPRCLTAKQSAVIEVILNETVCVVEFSSCKALGRVSLRSMGRTIAVGVVTRIIEEQG* 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1393 793 Pfam Elongation factor Tu C-terminal domain 681 788 IPR004160 -
Gso5g1393 793 PRINTS GTP-binding elongation factor signature 366 379 IPR000795 GO:0003924|GO:0005525
Gso5g1393 793 PRINTS GTP-binding elongation factor signature 425 433 IPR000795 GO:0003924|GO:0005525
Gso5g1393 793 PRINTS GTP-binding elongation factor signature 445 455 IPR000795 GO:0003924|GO:0005525
Gso5g1393 793 PRINTS GTP-binding elongation factor signature 461 472 IPR000795 GO:0003924|GO:0005525
Gso5g1393 793 PRINTS GTP-binding elongation factor signature 506 515 IPR000795 GO:0003924|GO:0005525
Gso5g1393 793 PANTHER OS04G0595300 PROTEIN 57 791 - -
Gso5g1393 793 CDD HBS1-like_II 592 676 - -
Gso5g1393 793 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 362 593 IPR000795 GO:0003924|GO:0005525
Gso5g1393 793 MobiDBLite consensus disorder prediction 183 269 - -
Gso5g1393 793 Pfam Elongation factor Tu GTP binding domain 365 581 IPR000795 GO:0003924|GO:0005525
Gso5g1393 793 SMART zf_4 47 71 IPR001876 -
Gso5g1393 793 ProSitePatterns Zinc finger RanBP2-type signature. 49 68 IPR001876 -
Gso5g1393 793 Gene3D Translation factors 590 679 - -
Gso5g1393 793 CDD EF1_alpha 366 585 - -
Gso5g1393 793 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 685 789 IPR009001 -
Gso5g1393 793 SUPERFAMILY Ran binding protein zinc finger-like 47 72 IPR036443 -
Gso5g1393 793 Gene3D - 353 586 IPR027417 -
Gso5g1393 793 CDD HBS1_C_III 680 788 - -
Gso5g1393 793 Pfam Elongation factor Tu domain 2 611 675 IPR004161 GO:0005525
Gso5g1393 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 607 IPR027417 -
Gso5g1393 793 Gene3D Translation factors 683 792 - -
Gso5g1393 793 ProSiteProfiles Zinc finger RanBP2 type profile. 45 74 IPR001876 -
Gso5g1393 793 PANTHER TRANSLATION FACTOR 57 791 - -
Gso5g1393 793 SUPERFAMILY Translation proteins 584 679 IPR009000 -
Gso5g1393 793 Gene3D - 41 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1393 Gso-Chr5 37407669 37415250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1393 47 84 Eukaryotic Initiation Factors Gene Family AT5G10630 55.263 7.36e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1393 K14416 - gmx:100801724 1498.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1393 5 37407669 37415250 Gso8g1009 8 9373750 9381180 GST
Gso15g0796 15 7319222 7322620 Gso5g1393 5 37407669 37415250 PCT