Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1392 ATGGGAATTCAGGGGTTTTTGCCGCTATTGAAGTCGATTATGGTTCCAATCCACATTAAGGATCTGAAGGGTTGTTCTGTAGCCGTAGACACCTACTCTTGGCTCCACAAAGGTGCCCTCTCTTGCAGCACCGAACTCTGCAAAGGGATGCCCACTACCAGGCACATTGAGTATTGCATGCACAGAGTAAATTTGCTGCGCCATTTTGGGGTTAAGCCTATTCTAGTGTTTGATGGAGGGCTTCTGCCAATGAAGAGTGAACAAGAGAACAAGCGTGCCAGGGCTAGAAAGGATAATCTTGCACGTGCAGTTGAACATGAGTCAGATGGAAATTCAGCTGCTGCTTATGAGTGCTACCAGAAAGCAGTTGATATTTCACCTCAAATTGCATGTGAACTAATTCAGGTATTGAAGCAGGAGAACTTGCAGTATATTGTTGCTCCTTACGAGGCAGATGCCCAGATGACATTCTTGGCAATTAGTGGACAAGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGCCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGGTGTTCAGTTTCAGGATTCCATGCTACAAAAGAATAAGGAGCTTAGTTTTGAAGGGTTCAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGTGATTATCTGCAGTCCTTGTCAGGTATGGGTCTCAAAAGGGCCCATGCAAGCATTAAAAAATTTAGAAGTTATGACAAGGTTCTTAAGCACTTGAGATATAGTGGAGTTTCTGTGCCTCCCTTTTATGAAGAGTCATTCAAGAAGGCTATACTTACTTTCCAATATCAACGGGTTTATGATCCAATTAATGAAAATATTGTTCATTTGTCTAATATATCTGATGATATTGGTGATGAGTTAGACTTTTTAGGCCCAACCATGCCAAAAGATATAGCACAAAGAATAGCAAAAGGGGATCTTGATCCAATTACCAAAATGCCATTTGAGCAAAAAGGAAATTCAGAGCTCCTCGGGTGTCACCTACTGCTGCTAATGAAACAAAGAACTCTACTGCATATTGACTCTGAGAATTGGGGCAGTGTCCCTCCTCCTAATATCCATATTGGATATAGTTCTGCCACAAACAATTCTGAATTTACAGAGTCTCCATGTCATGAGAAGAAAAGCCCTGAACATACAGTACTGCGAAAGCCCAGGCAGCCAATTCATAAACCGTGTCTAGGGTTGCATGGGCACACAAACGTCCAAGACACAGCTGAAGGAAAAACCAGGGAGGAGGCAACAAGAAAGGTAACTGTAAGGAGTGCTTATTTTCAGCACAAGCAAGTGGAAAAGAATGTTTATGGCGAAAAACAAGATTGCCTGTCATCTGGCATTGCCATTGATGAGAGAAAAAATGCCTTATCTGAATAG 1428 0.4153 MGIQGFLPLLKSIMVPIHIKDLKGCSVAVDTYSWLHKGALSCSTELCKGMPTTRHIEYCMHRVNLLRHFGVKPILVFDGGLLPMKSEQENKRARARKDNLARAVEHESDGNSAAAYECYQKAVDISPQIACELIQVLKQENLQYIVAPYEADAQMTFLAISGQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQDSMLQKNKELSFEGFNRQMLLEMCILSGCDYLQSLSGMGLKRAHASIKKFRSYDKVLKHLRYSGVSVPPFYEESFKKAILTFQYQRVYDPINENIVHLSNISDDIGDELDFLGPTMPKDIAQRIAKGDLDPITKMPFEQKGNSELLGCHLLLLMKQRTLLHIDSENWGSVPPPNIHIGYSSATNNSEFTESPCHEKKSPEHTVLRKPRQPIHKPCLGLHGHTNVQDTAEGKTREEATRKVTVRSAYFQHKQVEKNVYGEKQDCLSSGIAIDERKNALSE* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1392 475 SMART xpgn3 1 99 IPR006085 GO:0004518
Gso5g1392 475 MobiDBLite consensus disorder prediction 407 431 - -
Gso5g1392 475 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Gso5g1392 475 PANTHER EXONUCLEASE 1 1 450 IPR032641 GO:0006281|GO:0035312
Gso5g1392 475 Gene3D - 1 207 - -
Gso5g1392 475 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Gso5g1392 475 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Gso5g1392 475 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Gso5g1392 475 Gene3D - 209 281 - -
Gso5g1392 475 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Gso5g1392 475 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Gso5g1392 475 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Gso5g1392 475 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Gso5g1392 475 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Gso5g1392 475 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 335 IPR036279 -
Gso5g1392 475 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 450 IPR006084 -
Gso5g1392 475 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Gso5g1392 475 Pfam XPG I-region 142 226 IPR006086 GO:0004518
Gso5g1392 475 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Gso5g1392 475 SMART xpgineu 138 208 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1392 Gso-Chr5 37398547 37403340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1392 1 264 Core DNA Replication Machinery Family AT5G26680 26.715 1.23e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1392 K10746 - gmx:100801178 960.674
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1392 5 37398547 37403340 Gso8g1007 8 9361512 9368008 GST