Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1391 ATGCCAGGGAACAATTATAACTGCGTCCCTTTAACACCAAGGTCTAGATTGGAAAGGCTTCTGAGGGAAAGAGAGCTAAGGAAATCCTTCAAGCTTATTCAACCAACGGAGGAAGCAAGAGATGGCAGCAAAGAGGGAGAACAATTTTATGGTGATTCATGCATAAGTGAGAATGAAATTTTGGGTATTCATAAAGAGGAAGAGGTCACGGAAACGAGTTTTACAGATAGAAGCCAAAGGCAAGATGAGAGGCCAAGCAAACAACGTTTGTTGGTGGTAGCTAACAGGTTGCCTGTGTCTGCTGTTAGGGAGGGTGTGGAGTCATATCGCCTTGAGATCAGTGTAGGCGGGCTAGTCAGTGCACTTCTAGGTGTAAAGGAATTTGATACCAGATGGATTGGGTGGGCTGGTGTGAATGTGCCTGATGATGTTGGGCAGAGAGCATTGACAAAAGCTTTAGCTGAAATGCGATGCATACCAGTATTTCTTGATGAGGAGATAGTTAACCAGTACTATAATGGCTACTGCAACAACATCTTATGGCCTCTATTTCATTACCTTGGGCTTCCACAAGAAGATCGACTTGCTACAACTCGTACTTTCCAATCCCAATTTGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTAGTAAATAAGCATTATGAGAAAGGAGATGTTGTTTGGTGCCATGATTACCACCTAATGTACCTTCCAAAATGTTTAAAAGAATACAATGAACAAATGAAAGTTGGTTGGTTTCTCCATACACCCTTTCCTTCCTCAGAAATACATAGGACTCTACCGTCCAGATCAGAGCTGTTGAGATCTGTACTTGCAGCTGACCTGGTGGGATTCCACACCTATGATTATGCAAGGCATTTTGTTAGTGCTTGTACTCGTATTCTTGGGCTTGAGGGAACACCTGAAGGAGTAGAAGATCATGGGAAACTGACCCGTGTGGCTGCGTTTCCTATTGGGATTGACTCTGATAGATTCATTCAAGCCCTTGAACTCCCTGAAGTCCAGGAACACATGAAAGAACTGAAAGAAAGATTTGCTGGCCGAAAGGTAATGTTGGGTGTCGATCGTCTTGATATGATAAAAGGAATTCCCCAAAAACTCTTGGCATTTGAAAAGTTCCTTGAGGAGAATTCACTCTGGCGTGATAAAGTTGTCTTGCTGCAAATTGCTGTACCTACAAGGAAAGATGTTCCGGAATATCAAAAGCTTACAAGCCAAGTGCATGAGATTGTAGGACGCATCAATGGAAGATTTGGAACACTTACAGCTGTTCCAATACACCATCTGGATCGGTCACTTGACTTTCATGAATTATGTGCACTCTATGCTGTAACTGATGTAGCACTTGTTACATCTTTAAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTTGCGTGTCAAGCATCCAAGAAAGGGGTTCTCATTTTAAGTGAGTTTGCAGGTGCAGCACAGTCTCTTGGTGCTGGTGCTATCTTGGTAAACCCATGGAACATCACAGAGGTTGCTGCTTCTATTGGTTATGCGTTGGAAATGTCAGCTGATGAAAGAGAAAAACGACATCAGTTTAATTTCAAACATGTTGAAACTCACACGTCACAGGAATGGGCAGCAACTTTTGTGAGTGAACTGAATGATACCATTGTTGAAGCTCAGCTTAGGACAAGACAAGTTCCTCCATTACTTCCCAACAAAGTGGCAGTTGATTGTTACTCAAAATCCAATAACCGACTAATTATACTGGGTTTCAATGCCACTTTGAATGAACCAGTGGGAAGGGCTGGTCAAATTAGAGAATTGGAACTTAAATTACACCCAAATATGAAGGAACCTTTAAAGAAGTTAACCGATGATCCAAAGACAACAATAGTTGTTCTGAGTGGGAGCTCTCGAGCAGTCCTGGACAAAAACTTCAGTGAATTTAACATGTGGTTGGCAGCAGAAAATGGAATGTTTTTGCGACGTACTTCAAGTGAGTGGATGACAACCATGCCTGAAAATTTAAACATGGATTGGGTTGATAGTGTGAAGCATGTTTTTGAGTATTTTACTGAAAGAACTCCAAGGTCTCATTTTGAGCTTCGGGAGACGTCAGTAGTATGGAATTACAAGTATGCAGATGTTGAGTTTGGAAGGATTCAAGCAAGAGATCTGCTTCAACATCTGTGGACAGGGCCAATATCAAACGCATATCTTGATGTTGTCCAAGGTGGTCGATCTGTTGAGGTTCGCACAGTTGGCGTGTCAAAGGGAGCAGCTATTGATCGTATCCTTGGAGAGATAGTTCATAGTAAAGGCATGAAGACGCCAATTGACTATGTCTTATGCATTGGGCACTTTCTAGCCAAGGATGAAGATGTGTATACATTTTTTGAGCCAGAGCTCCCTTCTGAATCACCTCCATTACCAAGAGCTATGCTATCCAAATCTAATTCTTACAGGCCATCATCTCTGCCAAAATTACCAGCCACCAAAACCGGGTCGAAGGCAGCTAAATACAGGAAACAACGTTCGTTGTCAAACATAGAAAAGAGAGAAATTGATCAATGGAGACCAAAGTATCGTGATAAAATAGCACTGCATGAGGGTTCCTCAGTGCTTGATCTAAATGGTGATAATTACTTCTCTTGTGTTGTTGGACGGAAAAGATCAAGTGCACGTTACCTTCTTAAAACCTCAGATGATGTTGTCAACCTCTTAAGTGACTTGGCAGAACATTCTTCATCACCAACTTAA 2763 0.4184 MPGNNYNCVPLTPRSRLERLLRERELRKSFKLIQPTEEARDGSKEGEQFYGDSCISENEILGIHKEEEVTETSFTDRSQRQDERPSKQRLLVVANRLPVSAVREGVESYRLEISVGGLVSALLGVKEFDTRWIGWAGVNVPDDVGQRALTKALAEMRCIPVFLDEEIVNQYYNGYCNNILWPLFHYLGLPQEDRLATTRTFQSQFDAYKKANQMFADVVNKHYEKGDVVWCHDYHLMYLPKCLKEYNEQMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDHGKLTRVAAFPIGIDSDRFIQALELPEVQEHMKELKERFAGRKVMLGVDRLDMIKGIPQKLLAFEKFLEENSLWRDKVVLLQIAVPTRKDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHELCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALEMSADEREKRHQFNFKHVETHTSQEWAATFVSELNDTIVEAQLRTRQVPPLLPNKVAVDCYSKSNNRLIILGFNATLNEPVGRAGQIRELELKLHPNMKEPLKKLTDDPKTTIVVLSGSSRAVLDKNFSEFNMWLAAENGMFLRRTSSEWMTTMPENLNMDWVDSVKHVFEYFTERTPRSHFELRETSVVWNYKYADVEFGRIQARDLLQHLWTGPISNAYLDVVQGGRSVEVRTVGVSKGAAIDRILGEIVHSKGMKTPIDYVLCIGHFLAKDEDVYTFFEPELPSESPPLPRAMLSKSNSYRPSSLPKLPATKTGSKAAKYRKQRSLSNIEKREIDQWRPKYRDKIALHEGSSVLDLNGDNYFSCVVGRKRSSARYLLKTSDDVVNLLSDLAEHSSSPT* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1391 920 Gene3D - 723 919 IPR023214 -
Gso5g1391 920 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 89 554 IPR012766 GO:0003825|GO:0005992
Gso5g1391 920 Pfam Glycosyltransferase family 20 89 554 IPR001830 GO:0003824|GO:0005992
Gso5g1391 920 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 66 912 IPR001830 GO:0003824|GO:0005992
Gso5g1391 920 MobiDBLite consensus disorder prediction 66 86 - -
Gso5g1391 920 Pfam Trehalose-phosphatase 611 806 IPR003337 GO:0003824|GO:0005992
Gso5g1391 920 SUPERFAMILY HAD-like 610 771 IPR036412 -
Gso5g1391 920 CDD HAD_TPP 587 803 - -
Gso5g1391 920 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 88 557 - -
Gso5g1391 920 MobiDBLite consensus disorder prediction 818 839 - -
Gso5g1391 920 CDD GT20_TPS 89 554 IPR001830 GO:0003824|GO:0005992
Gso5g1391 920 Gene3D Glycogen Phosphorylase B; 336 539 - -
Gso5g1391 920 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 66 912 - -
Gso5g1391 920 Gene3D Glycogen Phosphorylase B; 80 335 - -
Gso5g1391 920 MobiDBLite consensus disorder prediction 818 832 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1391 Gso-Chr5 37389334 37398343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1391 1 919 Trehalose Biosynthesis Gene Families AT1G78580 74.340 0.0 1398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1391 K16055 - gmx:100816642 1821.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1391 5 37389334 37398343 Gso8g1006 8 9352914 9361058 GST