Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1388 ATGGCTCTTCCAAACCAATCCATGTCATCAGAGTCTCCCCAGAGAAAGATGGGAAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACCACCAGTCGACAAGTTACCTTCTGCAAGCGCAGAAATGGTTTGCTCAAGAAGGCATATGAGTTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATTGTCTTTTCAAACCGTGGCCGCCTCTATGAATACGCTAATAACAGCGTCAAAGCTTCAATTGAGAGGTACAAGAAAGCAAGTTCAGATTTATCTACTGGTGGACAATCTGCTTCTGAGGCTAATGCTCAGTTTTACCACCAAGAAGCTGCCAAACTGCGTGTACAAATCAGCAATCTGCAGAATCACAATAGTCAAATGATGGGTGAGGGTTTGAGCACCATGAATGGCAAGGATCTCAAAAACCTAGAGACTAAATTAGAAAAAGGAATCAGCAGAATTCGTTCCAAGAAGAATGAGATGCTATTTGCAGAAATTGAGCACATGAAGAAGAGGGAGATACACTTGAACAATGACAATCAGCTTCTTAGAGCAAAGATAGCAGCAGGTGAGAGGAGTCACCATAATGTTAACGGGTTGTCTGGAAGCATAAGCTATGAATCGATGCAATCTCAGTTTGACTCCCGCGGCTTCTTCCAAGTAACTGGATTACAACCTAATAATAATCAGTATGCCGGACAAGACAACATGTCCCTTCAATTTGTTTGA 732 0.4262 MALPNQSMSSESPQRKMGRGKIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYANNSVKASIERYKKASSDLSTGGQSASEANAQFYHQEAAKLRVQISNLQNHNSQMMGEGLSTMNGKDLKNLETKLEKGISRIRSKKNEMLFAEIEHMKKREIHLNNDNQLLRAKIAAGERSHHNVNGLSGSISYESMQSQFDSRGFFQVTGLQPNNNQYAGQDNMSLQFV* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1388 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Gso5g1388 243 ProSiteProfiles K-box domain profile. 104 194 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso5g1388 243 Gene3D - 29 96 IPR036879 GO:0003677|GO:0046983
Gso5g1388 243 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Gso5g1388 243 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Gso5g1388 243 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Gso5g1388 243 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Gso5g1388 243 SUPERFAMILY SRF-like 18 89 IPR036879 GO:0003677|GO:0046983
Gso5g1388 243 CDD MADS_MEF2_like 18 91 IPR033896 GO:0000977|GO:0045944
Gso5g1388 243 Coils Coil 104 124 - -
Gso5g1388 243 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Gso5g1388 243 MobiDBLite consensus disorder prediction 1 21 - -
Gso5g1388 243 PANTHER AGAMOUSB 11 237 - -
Gso5g1388 243 Pfam K-box region 101 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso5g1388 243 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Gso5g1388 243 Coils Coil 141 161 - -
Gso5g1388 243 PANTHER MADS BOX PROTEIN 11 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1388 Gso-Chr5 37347983 37356151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1388 15 243 MADS-box Gene Family AT3G58780 61.181 7.64e-96 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso5g1388 K-box 3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1388 K09264 - gmx:100800107 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1388 5 37347983 37356151 Gso8g1004 8 9325812 9333264 GST
Gso5g1388 5 37347983 37356151 Gso15g0753 15 6812356 6822556 PCT
Gso5g1388 5 37347983 37356151 Gso11g2517 11 41214562 41224220 PCT
Gso15g0753 15 6812356 6822556 Gso5g1388 5 37347983 37356151 PCT
Gso11g2517 11 41214562 41224220 Gso5g1388 5 37347983 37356151 PCT