Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1383 ATGATGCTACCTAGGACCTTCTTTGCTTTCTTACTCTTTGCACTGAGTTGCTTCAGATGGCTGGAATACGCAGAATCCAAACTACCCAAACTACCCCAAGAGGAGGTTGATGCTCTTAAAGAAATCACTAGCACGATGGGTGCAACCTATTGGGAGTTTGATAGCGATTCTTGTCATAGTAAAATGCTGAGATTAACACCAGAGCCACCTAAAGGATCTCAAAGCAGCATTGATTGTGATTGCACTTCTGAAAATAACACCTGTCATGTAGTTGGGATTACCTTCAAACGGCTCAACCTTCCTGGCATGCTTCCACCTTATTTGGCTAAGCTTCCTAACCTCACACAAGTTGATTTTGCTTTGAACTACCTAAGTGGTACGATTCCAAAGGAGTGGGGTTCAACAAAACTAACTAATATCTCTCTATTTGTTAATCGTATATTTGGGGAAATTCCTAAGGAGTTGGGAAGTATTACCACTCTAACATACCTGAATCTCGAAGCAAATCAATTTTCTGGTGTTGTTCCCCACGAACTTGGAAGTCTCTCTAACCTGAAGACTTTGATTTTATCATCCAATAAATTATCTGGGAAGTTACCGGTGACATTTGCTAAGTTGCAGAATTTGACAGATTTCAGGATAAGTGATAACAGTTTCAACGGAGAAATACCTAGCTTCATACAGAATTGGAAATCACTTGAAAGATTAGATATGCTTGCAAGTGGAATGGAGGGCCGTATCCCATCAAATATATCTCTTTTGAGTAATTTAAATCAGTTGAAGATTAGTGACATAAATAGTCCAAGTCAGGATTTTCCTATGTTAAGAAACATGACAGGAATGACAATATTAGTTTTGAGAAATTGTCATATTACTGGGGAGCTTCCTAGTTACTTCTGGAGCATGAAGAATTTGAATATGTTGGACGTCAGTTTCAATAAGTTGGTTGGGGAAATACCAGTCATCGATGTACCTGTGGGGCATCTGAGATTTCTCTTCCTAACTGGCAACATGCTAAGTGGTAATCTACCTGAGTCACTCTTGAAGGATGGAAGCAGTCTTGACCTTTCTTACAACAATTTTACGTGGCAAGGACCAGATCAACCTGCTTGTAGAGATTACCTAAATTTAAACTTAAACTTGTTCCGGAGCTTCTCAGGGACCAAATTACGGGGGCTTCTTCCATGTTCAAAGATCTCCAATTGTCCTGCATATTCACACTGTTTTCATGTTAATTGTGGTGGAAAGAATGTAAAGGTGATGGAAAATGATGAAAATATTCAATATGTAGGAGATGATGGTGCGTTAGGTAGTAGTGCTGCTAAATATTTCATTGATTATGAAAATCACTGGGGATTTAGCAGCACTGGAGATTTCTTGGATGATGGTGATTACCTAAATTCACGTTACATTAGGTCTTTGCCGTCTTCAAATTTGCCTGAACTATATAAAACGGCTCGTGTTGCTCCAATTTCACTTACTTATTTTCGCTATTGCATGGAAAATGGGAAATATACTGTAAAACTCCACTTTGCAGAAATACAATTTTCAAACGATAACACATACAGTAGTCTTGGGAGGCGCTTATTTGATATTTATGTTCAGGGAGCATTATTTAGGAAGGATTTTAATATTGAAGGTGAAACGCATGTTGCTCAAAAACCGTATATACTGTCCTTATATAATGTCAATGTAACAGACAATATTCTGGAGATTCAATTCTACTGGGCTGGCAAGGGGACTACAAGGATTCCTGTTAGTGGAGTTTATGGTCCCCTCATATCAGCTTTCTCTATTGTTTCTGATTCTAAACCTTGTACAGACCAAAAAAATGTAAGGCATAAGATAATCGTTGGAGTTGGATTTGGAGTTACAGCTCTATGCCTTGTCATTATCATAGTTGGAATCTTTTGGTGGAAGGGCTACTTCAAAGGAATAATTAGGAAAATAAAAGATACTGAAAGACGAGATTGTTTAACGGGGACATTTACGTTAAAACAAATTAGAGATGCCACTGAGGATTTCAGTCCTGATAACAAGATTGGAGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAATTATCTGATGGTACATTGGTAGCAGTCAAGCAACTCTCATCAAGGTCACGGCAGGGAAACGGTGAATTTTTGAATGAGATAGGCATGATATCTTGTTTGCAACACCCTAATCTTGTGAAACTTCATGGATTTTGCATTGAAGGGGATCAATTGATATTGGTGTATGAGTACATGGAAAATAATAGCCTGGCTCATGCTTTATTCAGCTCAAAAGATCAACTTAAACTTGATTGGGCAACAAGGCTTAGGATCTGTATTGGCATAGCAAAAGGTCTTGCATTTCTACACGAAGAATCAAGACTCAAGATTGTTCATCGAGACATCAAAGCTACTAATGTGTTACTGGATGGGAATTTAAACCCTAAAATATCTGACTTTGGGCTGGCTAGGCTTGATGAAGAGAAAACCCATGTCACCACCCGAATCGCTGGGACAATAGGATATATGGCACCAGAATATGCATTATGGGGTTACTTGTCTTACAAGGCTGATGTTTACAGTTATGGGGTTGTGGTCTTCGAAGTTGTTAGTGGGAAGAACTACAAGAATTTTATGCCAAGTGATAATTGTGTTTGCCTTTTAGACAAGGCATTTCATCTGCAGCGTGCAGAAAATTTAATAGAGATGGTTGATGAAAGGTTGCGATCAGAGGTAAACCCAACTGAAGCTATAACTTTGATGAAAGTAGCTCTCCTGTGCACCTCTGTATCACCTTCACATAGGCCTACAATGTCTGAGGTTGTAAACATGCTTGAAGGGAGAATCAGCATTCCAAATGCTATCCAACAACCAACTGATTTTAGTGAAGATTTAAGGTTTAAAGCCATGAGGGACATTCATCAACAAAGGGAAAATCACAGTTTGAGTACAAGCTAA 2955 0.3882 MMLPRTFFAFLLFALSCFRWLEYAESKLPKLPQEEVDALKEITSTMGATYWEFDSDSCHSKMLRLTPEPPKGSQSSIDCDCTSENNTCHVVGITFKRLNLPGMLPPYLAKLPNLTQVDFALNYLSGTIPKEWGSTKLTNISLFVNRIFGEIPKELGSITTLTYLNLEANQFSGVVPHELGSLSNLKTLILSSNKLSGKLPVTFAKLQNLTDFRISDNSFNGEIPSFIQNWKSLERLDMLASGMEGRIPSNISLLSNLNQLKISDINSPSQDFPMLRNMTGMTILVLRNCHITGELPSYFWSMKNLNMLDVSFNKLVGEIPVIDVPVGHLRFLFLTGNMLSGNLPESLLKDGSSLDLSYNNFTWQGPDQPACRDYLNLNLNLFRSFSGTKLRGLLPCSKISNCPAYSHCFHVNCGGKNVKVMENDENIQYVGDDGALGSSAAKYFIDYENHWGFSSTGDFLDDGDYLNSRYIRSLPSSNLPELYKTARVAPISLTYFRYCMENGKYTVKLHFAEIQFSNDNTYSSLGRRLFDIYVQGALFRKDFNIEGETHVAQKPYILSLYNVNVTDNILEIQFYWAGKGTTRIPVSGVYGPLISAFSIVSDSKPCTDQKNVRHKIIVGVGFGVTALCLVIIIVGIFWWKGYFKGIIRKIKDTERRDCLTGTFTLKQIRDATEDFSPDNKIGEGGFGPVYKGQLSDGTLVAVKQLSSRSRQGNGEFLNEIGMISCLQHPNLVKLHGFCIEGDQLILVYEYMENNSLAHALFSSKDQLKLDWATRLRICIGIAKGLAFLHEESRLKIVHRDIKATNVLLDGNLNPKISDFGLARLDEEKTHVTTRIAGTIGYMAPEYALWGYLSYKADVYSYGVVVFEVVSGKNYKNFMPSDNCVCLLDKAFHLQRAENLIEMVDERLRSEVNPTEAITLMKVALLCTSVSPSHRPTMSEVVNMLEGRISIPNAIQQPTDFSEDLRFKAMRDIHQQRENHSLSTS* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1383 984 Pfam Protein tyrosine and serine/threonine kinase 678 944 IPR001245 GO:0004672|GO:0006468
Gso5g1383 984 Gene3D - 406 604 - -
Gso5g1383 984 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Gso5g1383 984 Gene3D Ribonuclease Inhibitor 270 374 IPR032675 -
Gso5g1383 984 Gene3D Ribonuclease Inhibitor 40 200 IPR032675 -
Gso5g1383 984 Gene3D Ribonuclease Inhibitor 201 269 IPR032675 -
Gso5g1383 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 796 808 IPR008271 GO:0004672|GO:0006468
Gso5g1383 984 Gene3D Transferase(Phosphotransferase) domain 1 751 959 - -
Gso5g1383 984 Gene3D Phosphorylase Kinase; domain 1 646 750 - -
Gso5g1383 984 PANTHER RECEPTOR-LIKE KINASE IN FLOWERS 1-RELATED 68 984 - -
Gso5g1383 984 Pfam Malectin domain 408 597 IPR021720 -
Gso5g1383 984 ProSiteProfiles Protein kinase domain profile. 675 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1383 984 CDD STKc_IRAK 681 946 - -
Gso5g1383 984 Pfam Leucine rich repeat 160 218 IPR001611 GO:0005515
Gso5g1383 984 SMART serkin_6 675 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1383 984 SUPERFAMILY Protein kinase-like (PK-like) 660 963 IPR011009 -
Gso5g1383 984 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 68 984 - -
Gso5g1383 984 SUPERFAMILY L domain-like 81 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1383 Gso-Chr5 37297601 37309268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1383 8 839 Receptor kinase-like Gene Family AT1G29750 57.775 0.0 968
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso5g1383 PK_Tyr_Ser-Thr 8.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1383 - - vra:106779815 1541.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1383 5 37297601 37309268 Gso11g2526 11 41322381 41331374 PCT
Gso11g2526 11 41322381 41331374 Gso5g1383 5 37297601 37309268 PCT