Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1381 ATGGATGAGAATTCAGCAACAAATGGAACCCATGAGGTGGTTTTAGATGTAAACAGGGACGTCTCTAGAACAACTCAAGCTTCACGCTCTTGTGTCAATGTTTCTTTCTTGCAGAAGTTGGTAGCTGAGGTGGTAGGCACGTATTTCTTGATATTTGCAGGGAGTGCTTCTGTGGTGGTGAACAAGAACAACAACAACGTTGTAACACTTCCTGGGATATCAATTGTTTGGGGACTGGTTGTGATGGTGCTGGTTTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCTGTCACCATTGCTTTTGCCTCCACCAAAAGGTTTCCCTTGAAGCAGGTTCCAGTTTATGTGGTGGCTCAGGTTGTTGGATCCACACTTGCAAGTGGGACTCTCAGACTATTATTTAGTGGCAAAGAAGCCCAGTTTTCAGGAACACTTCCATCTGGGTCCAACCTGCAAGCTTTTGTGATTGAATTCTTAATCACTTTTTTCCTTATGTTTGTCGTATCCGGGGTTGCCACTGATAACAGAGCGATCGGTGAGTTGGCCGGGATTGCCGTTGGGTCTACTGTGCTGTTGAATGTGATGTTTGCAGGGCCAATCACAGGAGCATCAATGAACCCAGCAAGAAGCATAGGGCCAGCGATTGTACACAAGGAATACCGAGGAATATGGATATATTTAGTGTCTCCAACTCTTGGGGCTGTGGCCGGCGCATGGGTCTACAATAGTATTCGTTACACGGACAAGCCACTGCGTGAGATCACCAAGAGTGCCTCTTTCCTTAAAGGAGTAGCCTCTAGGTGA 813 0.4662 MDENSATNGTHEVVLDVNRDVSRTTQASRSCVNVSFLQKLVAEVVGTYFLIFAGSASVVVNKNNNNVVTLPGISIVWGLVVMVLVYSVGHISGAHFNPAVTIAFASTKRFPLKQVPVYVVAQVVGSTLASGTLRLLFSGKEAQFSGTLPSGSNLQAFVIEFLITFFLMFVVSGVATDNRAIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPAIVHKEYRGIWIYLVSPTLGAVAGAWVYNSIRYTDKPLREITKSASFLKGVASR* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1381 270 Gene3D Glycerol uptake facilitator protein. 2 258 IPR023271 -
Gso5g1381 270 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 1 268 - -
Gso5g1381 270 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Gso5g1381 270 CDD MIP 38 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1381 270 SUPERFAMILY Aquaporin-like 32 258 IPR023271 -
Gso5g1381 270 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1381 270 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1381 270 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1381 270 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1381 270 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1381 270 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1381 270 PANTHER AQUAPORIN NIP2-1 1 268 IPR034294 -
Gso5g1381 270 Pfam Major intrinsic protein 33 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1381 270 TIGRFAM MIP: MIP family channel proteins 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1381 Gso-Chr5 37287406 37290520 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1381 34 270 Major Intrinsic Protein MIP AT5G37820 62.025 5.99e-105 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1381 K09874 - gmx:100798526 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1381 5 37287406 37290520 Gso8g1002 8 9286105 9288703 GST
Gso5g1381 5 37287406 37290520 Gso15g0743 15 6706642 6709157 PCT
Gso15g0743 15 6706642 6709157 Gso5g1381 5 37287406 37290520 PCT