Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1380 ATGGCTGATTATTCAGCACGAACTGAATCCTGCGAGGTAGTTGTAAATGTAACCAAGGACACCTCCAAAACAATGGAACCCTCAGACTCCTTTGTCTCTGTTCCTTTCTTGCAGAAGTTGGTAGCTGAGGTGGTGGGAACATATTTCTTGATATTTGCAGGGTGTGCTTCAGTGGTGGTGAATAAGAACAACGACAACGTGGTAACACTTCCTGGGATAGCAATTGCTTGGGGGCTGGTTGTAACAGTGTTGGTTTACACTGTTGGTCACATTTCTGGTGCCCATTTCAATCCTGCTGTCACCATTGCTTTTGCTTCTACCAGAAGGTTCCCCTTGATGCAGGTACCAGCTTATGTAGCAGCTCAACTCCTAGGAAGCACACTTGCCAGTGGAACTCTGAAACTATTATTTATGGGGAAGCATGACCAGTTTTCAGGAACACTCCCAAATGGGACTAACCTGCAAGCTTTTGTGTTTGAATTCATAATCACATTTCTCCTTATGTTTGTCATATCCGGGGTTGCCACCGATAACAGAGCGGTTGGTGAGTTGGCTGGGATTGCAATTGGGTCTACAATACTGCTTAATGTGATTATTGGAGGGCCAGTGACAGGAGCATCAATGAACCCAGTTAGAAGCCTAGGACCTGCTATTGTACACGGCGAATACAGAGGAATATGGATATATTTGTTGGCACCGGTTGTGGGGGCCATAGCTGGAGCATTGGTATACAACACCATTAGGTACACGGACAAGCCATTGCGAGAAATCACCAAGAGTGCCTCTTTCCTCAAAGGCCGTGGTGGCTCCACATAA 816 0.462 MADYSARTESCEVVVNVTKDTSKTMEPSDSFVSVPFLQKLVAEVVGTYFLIFAGCASVVVNKNNDNVVTLPGIAIAWGLVVTVLVYTVGHISGAHFNPAVTIAFASTRRFPLMQVPAYVAAQLLGSTLASGTLKLLFMGKHDQFSGTLPNGTNLQAFVFEFIITFLLMFVISGVATDNRAVGELAGIAIGSTILLNVIIGGPVTGASMNPVRSLGPAIVHGEYRGIWIYLLAPVVGAIAGALVYNTIRYTDKPLREITKSASFLKGRGGST* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1380 271 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1380 271 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1380 271 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1380 271 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1380 271 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1380 271 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1380 271 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1380 271 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Gso5g1380 271 PANTHER NODULIN-26 1 269 - -
Gso5g1380 271 SUPERFAMILY Aquaporin-like 32 258 IPR023271 -
Gso5g1380 271 Gene3D Glycerol uptake facilitator protein. 3 258 IPR023271 -
Gso5g1380 271 PANTHER AQUAPORIN NIP2-1 1 269 IPR034294 -
Gso5g1380 271 Pfam Major intrinsic protein 32 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gso5g1380 271 TIGRFAM MIP: MIP family channel proteins 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1380 Gso-Chr5 37282676 37287034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1380 19 265 Major Intrinsic Protein MIP AT5G37820 60.643 1.85e-104 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1380 K09874 - gmx:100813448 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1380 5 37282676 37287034 Gso8g1001 8 9280001 9283523 GST
Gso5g1380 5 37282676 37287034 Gso11g2530 11 41368288 41370856 PCT
Gso11g2530 11 41368288 41370856 Gso5g1380 5 37282676 37287034 PCT