Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1379 ATGGATGATGCACAGGGTAGTTCAAGTTCCCTGCCCCCTTTCCTGGCAAAGACTTATGAGATGGTGGATGATCCTTCCACGGATTCGGTTGTTTCGTGGAGTATCACTAGCAAGAGTTTCATTGTATGGAATCCCCCAGAATTTGCCAGGGATTTGCTGCCTAGATTCTTTAAGCACAACAACTTCTCAAGTTTCATCAGGCAGCTGAACACATATGGATTTAGAAAAGTTGACCCAGAACAATGGGAATTTGCCAATGATGATTTTGTTAGAGGGCAGCCTCATCTTATGAAGAACATCCATAGACGGAAGCCGGTTCATAGCCATTCTTTGCAGAATCTCCAAGCACAAGGCCCAATAGGGGAGGCAGAAAGGCAGAGTTTTACTGATGAAATAGAGAAGCTTAAACACGATAAAGAGCAACTCCTCGTGGAATTACAGAAATATCAGCATGAGTGGCAGGCATATGAGATACAAATGCATTCCTCAAAAGATCGGTTGGAAAAGTTGGAACAGAATCAACAAAAGATGGTTTCTTCTGTTTCTCATGTATTGCAGAAACCTGTGATTTCTGTAAATATCTTGCCTCTGACAGAAACCATGGATAGAAAGCGAAGGTTGCCGAGAAGTGGCCACTTTTATGATGAAGCTAGCGTTGAAGATGCTATGGAAACTTCCCAAATGTTACCAAGAGAAAATGCAGACAATACCACTGTCTTGACGTTAAATGTGGAGCGACTGGATCAGCTTGAATCATCCATGGCATTTTGGGAGGCTATTGTACATGATATTGGTGACACCTTCGTCCAAATTCAGTCAAACATGGATTTTGATGAATCTACAAGTTGTGCTGATAGTCCATCTATATCTTGTGCACAATTAGATGTTGAAGTTCGGCCTAAGTCACCTGGAATTGACATGAACTCTGAGCCAACTACAGCTGCTGTTCCTGAGCCTGTTGCATCAAAAGAACAACCTGCGGGAACCACTGTTGCAGCAACTGGTGTTAATGATGTATTCTGGGAGCAGTTCTTGACTGAGGATCCTGGTGCATCAGAAACACAGGAAGTGCAGTCAGAAAGAAAGGAATATGATGGCAGAAAGAATGAAGGAAAACCCAGCGACCTTAACAAATTTTGGTGGAACAAATGGAATGCAAATAATCTTCCAGAACAGATGGGGCATGTTGGTCAAGCAGAGAAAACATAG 1209 0.4268 MDDAQGSSSSLPPFLAKTYEMVDDPSTDSVVSWSITSKSFIVWNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQGPIGEAERQSFTDEIEKLKHDKEQLLVELQKYQHEWQAYEIQMHSSKDRLEKLEQNQQKMVSSVSHVLQKPVISVNILPLTETMDRKRRLPRSGHFYDEASVEDAMETSQMLPRENADNTTVLTLNVERLDQLESSMAFWEAIVHDIGDTFVQIQSNMDFDESTSCADSPSISCAQLDVEVRPKSPGIDMNSEPTTAAVPEPVASKEQPAGTTVAATGVNDVFWEQFLTEDPGASETQEVQSERKEYDGRKNEGKPSDLNKFWWNKWNANNLPEQMGHVGQAEKT* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1379 402 MobiDBLite consensus disorder prediction 354 374 - -
Gso5g1379 402 MobiDBLite consensus disorder prediction 346 376 - -
Gso5g1379 402 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g1379 402 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 383 IPR027725 -
Gso5g1379 402 Coils Coil 125 173 - -
Gso5g1379 402 Gene3D - 6 104 IPR036388 -
Gso5g1379 402 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4C 1 383 - -
Gso5g1379 402 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g1379 402 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g1379 402 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g1379 402 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Gso5g1379 402 MobiDBLite consensus disorder prediction 303 326 - -
Gso5g1379 402 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso5g1379 402 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1379 Gso-Chr5 37261899 37264223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1379 7 402 HSF AT4G18880 53.071 1.08e-126 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso5g1379 HSF_DNA-bind 3.2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1379 K09419 - gmx:100798004 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1379 5 37261899 37264223 Gso8g1000 8 9260817 9263042 GST
Gso5g1379 5 37261899 37264223 Gso15g0734 15 6633235 6635295 PCT
Gso5g1379 5 37261899 37264223 Gso11g2537 11 41426326 41428467 PCT
Gso15g0734 15 6633235 6635295 Gso5g1379 5 37261899 37264223 PCT
Gso11g2537 11 41426326 41428467 Gso5g1379 5 37261899 37264223 PCT