Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1378 ATGAAGTGGGGTGGAAAAAAGCCTTCTCCTTCTTCTTCTTCTTCTTCTAGGCCTTCTTCTTTCATATCTCATGTATCTCCTTTTTCATGGCTTTCCAAGTTCAAGCAGATGAGAATCAACTCAGAGCCAAAACCTGGCACACTGAAGCGGAATTCAACTCCATCTGATTATACTTCACCCCATTATGCTAATATAAATAGAGGCAGGTTTTATGGAGGGGATGATGATGAGGCTTTCTGGAGACTCTCATTTGGTGAAGAGAGTGGTAACGAGCATAGGAAAAGTGAAGATATTCTGAAACCAGTAAAGTACAATTTGGATGCTGAACATGCCATTCCATCCTCAAGTTTCCCCACTGGATTGAATAATGCTAAAAGGCAAGGTAGTAGAAAAGAAGGCACTCAGAAGATGAAGCAGAAGGACACTACTGGACTGAGAGAAGAAACAAAATTGCTGAATGAAGCATCAAAGAGTGTAAAGGAACTTGAATCCTTAAGGAGGAGATATGAGAGGAAAGCACAAAGAGTTTTGCAAGAGCAGCTCTTGAAATTGGAGAAGGCAGAAGAGGAAGCTGAGTTTGCATCAAGTCCATTCTTAGGAAATGATGTGCTGCAATTTGAGTCACCAAGAACAATTCGCACACCAAGAAAGCATTTTTTTGTAGATTCAAAGAGTTCCGGCCTTGGAATTCTCAGAGAATCTTGTGTGTGTGGTCCTCAATTGGGTTCTGAGTGGCATAGTTTGAATCAAACTGGGGGGTTGAAATTGAAACCAAAGGGTAACCAACAAAGGCAATCTCTTCATGTGAGCAGAGAAAATCAGAAGAGGAAACCAAAGCAGAACTCCAAGGTTAGAGTATATTCTCCAAGGATGGGTTCCAAGGTCGAAGTCCGCAAAATAAAGGCCATGGAAGAGAAGAAGAAAGCAAAACTGAAGATGAAGAAAGAAGAGGAAATTGTGGAGGAAACAGAAGAAGGGTTAGATAGCTTTGCTGTGGTGAAATGTTCTTTGGATCCACGGAAAGATTTCAGAGATTCAATGATTGAGATGATCACAGAGAAACAGATCAGCGAGCCAGAAGAAATGGAAGATCTGTTAGCGTGCTATCTGACTTTGAATTCTAATGAGTACCATGATCTCATCATCCAAGTGTTCAAGCAAGTATGGTTGTGTATGAGCCAAGCCAGTTCGGATATTCAATCAGACAAGCAATGTTGCCGTTGTGATTAA 1230 0.4114 MKWGGKKPSPSSSSSSRPSSFISHVSPFSWLSKFKQMRINSEPKPGTLKRNSTPSDYTSPHYANINRGRFYGGDDDEAFWRLSFGEESGNEHRKSEDILKPVKYNLDAEHAIPSSSFPTGLNNAKRQGSRKEGTQKMKQKDTTGLREETKLLNEASKSVKELESLRRRYERKAQRVLQEQLLKLEKAEEEAEFASSPFLGNDVLQFESPRTIRTPRKHFFVDSKSSGLGILRESCVCGPQLGSEWHSLNQTGGLKLKPKGNQQRQSLHVSRENQKRKPKQNSKVRVYSPRMGSKVEVRKIKAMEEKKKAKLKMKKEEEIVEETEEGLDSFAVVKCSLDPRKDFRDSMIEMITEKQISEPEEMEDLLACYLTLNSNEYHDLIIQVFKQVWLCMSQASSDIQSDKQCCRCD* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1378 409 MobiDBLite consensus disorder prediction 129 148 - -
Gso5g1378 409 MobiDBLite consensus disorder prediction 248 268 - -
Gso5g1378 409 MobiDBLite consensus disorder prediction 248 285 - -
Gso5g1378 409 PANTHER TRANSCRIPTION REPRESSOR OFP4 9 405 - -
Gso5g1378 409 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 331 392 IPR006458 -
Gso5g1378 409 MobiDBLite consensus disorder prediction 39 70 - -
Gso5g1378 409 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 9 405 IPR038933 GO:0045892
Gso5g1378 409 MobiDBLite consensus disorder prediction 45 62 - -
Gso5g1378 409 Pfam Transcriptional repressor, ovate 336 392 IPR006458 -
Gso5g1378 409 MobiDBLite consensus disorder prediction 7 22 - -
Gso5g1378 409 MobiDBLite consensus disorder prediction 1 22 - -
Gso5g1378 409 Coils Coil 145 190 - -
Gso5g1378 409 Coils Coil 299 326 - -
Gso5g1378 409 ProSiteProfiles OVATE domain profile. 332 391 IPR006458 -
Gso5g1378 409 MobiDBLite consensus disorder prediction 111 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1378 Gso-Chr5 37252230 37253731 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Gso5g1378 Ovate 1.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1378 - - gmx:106798868 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1378 5 37252230 37253731 Gso8g0999 8 9254450 9256269 GST
Gso5g1378 5 37252230 37253731 Gso15g0733 15 6619108 6626728 PCT
Gso5g1378 5 37252230 37253731 Gso11g2538 11 41433215 41434456 PCT
Gso15g0733 15 6619108 6626728 Gso5g1378 5 37252230 37253731 PCT
Gso11g2538 11 41433215 41434456 Gso5g1378 5 37252230 37253731 PCT