Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1377 ATGGCTTCGGCGGCCATATTCTCGTCGCTACGGCGGCGCCGGTCTCCGTCGCTGGAGGCGTTTCTGGTGCCGGTCGACCTCTCCGACGTGGCGCTGCTGGAGACTCTTATCTCCGTCGCCAGCGACGTCGCGTCCTGCTTCTCCGGCCACCGGTTCCCCTTCCAGCGCCGGAACTCGCGTGCCCTCATCGGAAAAGTTGAGATTTTCCGGTCAATGTTGGAGTGTCTGAGAGACTCCGCTGCCGCCGGAGCTCTTACTCCGACGGCGGTGCTGTGCTTAAAGGAGTTCTACCTGCTTCTATATCGCTCAAAGATTCTTCTTGATTACTGTGCCCAATCGAGCAAGTTGTGGCTGCTGCTTCAGAACCATTGTGTTTCTGGTCACTTCCATGATCTGAGCCAAGAATTTTCGACCCTTTTGGATGTTTTTCCCGTTGGGGAAGTTGGCCTCAGTGATGATGTTAGGGAACAGATTGAGTTGTTGCAGAGACAATCCAAAAGGGCTAAGTTGTTCATAGATAAGAAAGATGATGTTCTTAGGACAAGGTTCTTTTGGTTTCTCGAAGAGTTTGAGAGTGGGAGGGTTCCTGATTCTAAGGACTTGAGGTGTTTCTTTGTGGATAAACTGAGGATTCTTGATGCTAAGAGTTGTAGGGTGGAGATTGAAGCCTTGGAGGAGCAGATTGTGAACCACGAGGGTGATGTTGAGCCAACGGTTCCTGTGCTTAATGGGATGGTGGCTATCACAAGGTATTGCAGGTTTTTGTTGTTTGGGTTTGAGGAAGAGTTGGAAATTGAGATTCAAAAGAAGGGGAGGAAGAGGTTGATTGCTCAGGAAATTGCTGAAACGTTTTTGACTGTTCCTAAGGACTTTTGTTGTCCGATATCATTGGATTTGATGTGTGATCCTGTGATAATTTCCACGGGTCAAACTTATGATAGGAGGTCTATATGGAGGTGGATGGAGGAAGGGCATTGTACTTGTCCAAAAACGGGGCAATTGCTTTCTCATAATAGGCTTGTTCCTAATCGTGCTCTTAGGAATATGATTATGCAGTGGTGCAGTGCACATGGAGTACCCTATGATCCACCTGAGGGGGTTGATGCATCTGTTGAGATGTTTGTATCAGCTTGTCCCTCCAAAGCTTCCCTCGAAGCTAACCGAGGGGCGACCATGCTTCTCATTCAGCAGCTTGCGGATGGGTCACAAGCTGCACAGACTGTGGCTGCTAGGGAGATAAGATTGTTGGCCAAAACTGGAAAGGAAAACCGTGCCTTCATCGCGCAGGCCGGGGCAATTCCTCATCTTAGGAACTTGCTTTCCTCACCTAATGCTGTTGCACAGGAGAATTCTGTGACAGCACTGCTCAACCTATCCATTTTTGAAAGAAATAAAAGCATGATCATGGAGGAGGAAGGGTGTTTGGGGTCAATAGTTGAGGTGTTGCGATTCGGGCATACAACTGAGGCAAGGGAGAATGCTGCTGCAACATTGTTCAGCCTCTCTGCTGTCCATGATTATAAGAAAAGAATTGCGGATAATGTGGGGGCTGTTGAAGCACTGGCTTGGTTGTTGCAAGAGGGGACTCAAAGAGGAAAGAAGGATGCTGTCACAGCATTGTTTAATCTCTCCACTCACACTGAGAATTGTTTGAGAATGATAGAGGCAGGGGCGGTGAAAGCTATGGTTGTGGCTTTGGGGAATGAAGGAGTTGCTGAGGAAGCAGCTGGTGCCTTGGCCTTGATTGTTCGGCAGCCTGTTGGCGCCATGGCGGTGGTGAGGGAGGAAGCAGCAGTAGCCGGATTGATAGGAATGATGCGTTGTGGAACGCCGAGAGGTAAAGAGAATGCAGTTGCAGCATTGTTGGAGCTGTGCAGGAGTGGAGGTGCAGCTGCAACTGAAAGAGTGGTTAGGGCGCCGGCTTTGGTTGGATTGCTTCAAACCTTGCTCTTTACAGGTACAAAGAGGGCAAGAAGAAAGGCAGCTTCACTAGCTAGAGTGTTTCAGAGATGTGAAAATGCATCTCTCCATTATGGTGGATTAGGTGTAGGTTATTCATTTGCTAGCGATTCAGCTTCAACCAGAAATACTACAACCTTTGTGAGTGACGTTTCACTTCCAATGTCCATTTCTGTTCCTGTTTTATAG 2148 0.486 MASAAIFSSLRRRRSPSLEAFLVPVDLSDVALLETLISVASDVASCFSGHRFPFQRRNSRALIGKVEIFRSMLECLRDSAAAGALTPTAVLCLKEFYLLLYRSKILLDYCAQSSKLWLLLQNHCVSGHFHDLSQEFSTLLDVFPVGEVGLSDDVREQIELLQRQSKRAKLFIDKKDDVLRTRFFWFLEEFESGRVPDSKDLRCFFVDKLRILDAKSCRVEIEALEEQIVNHEGDVEPTVPVLNGMVAITRYCRFLLFGFEEELEIEIQKKGRKRLIAQEIAETFLTVPKDFCCPISLDLMCDPVIISTGQTYDRRSIWRWMEEGHCTCPKTGQLLSHNRLVPNRALRNMIMQWCSAHGVPYDPPEGVDASVEMFVSACPSKASLEANRGATMLLIQQLADGSQAAQTVAAREIRLLAKTGKENRAFIAQAGAIPHLRNLLSSPNAVAQENSVTALLNLSIFERNKSMIMEEEGCLGSIVEVLRFGHTTEARENAAATLFSLSAVHDYKKRIADNVGAVEALAWLLQEGTQRGKKDAVTALFNLSTHTENCLRMIEAGAVKAMVVALGNEGVAEEAAGALALIVRQPVGAMAVVREEAAVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVVRAPALVGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYSFASDSASTRNTTTFVSDVSLPMSISVPVL* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1377 715 PANTHER U BOX DOMAIN-CONTAINING 11 692 - -
Gso5g1377 715 Pfam U-box domain 287 357 IPR003613 GO:0004842|GO:0016567
Gso5g1377 715 Coils Coil 214 234 - -
Gso5g1377 715 SUPERFAMILY ARM repeat 390 668 IPR016024 -
Gso5g1377 715 SMART Ubox_2 290 353 IPR003613 GO:0004842|GO:0016567
Gso5g1377 715 SUPERFAMILY RING/U-box 276 361 - -
Gso5g1377 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 361 IPR013083 -
Gso5g1377 715 CDD RING-Ubox_PUB 291 333 IPR045210 -
Gso5g1377 715 SMART arm_5 505 545 IPR000225 GO:0005515
Gso5g1377 715 SMART arm_5 546 584 IPR000225 GO:0005515
Gso5g1377 715 SMART arm_5 462 503 IPR000225 GO:0005515
Gso5g1377 715 SMART arm_5 420 460 IPR000225 GO:0005515
Gso5g1377 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Gso5g1377 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 431 473 IPR000225 GO:0005515
Gso5g1377 715 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 692 - -
Gso5g1377 715 Gene3D - 391 666 IPR011989 -
Gso5g1377 715 ProSiteProfiles U-box domain profile. 286 360 IPR003613 GO:0004842|GO:0016567
Gso5g1377 715 Pfam Armadillo/beta-catenin-like repeat 421 459 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1377 Gso-Chr5 37241987 37244724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1377 1 715 U-box Gene Family AT1G29340 68.707 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1377 - - gmx:100797462 1343.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1377 5 37241987 37244724 Gso8g0998 8 9245373 9248053 GST
Gso5g1377 5 37241987 37244724 Gso15g0732 15 6613907 6616734 PCT
Gso5g1377 5 37241987 37244724 Gso11g2539 11 41442083 41444966 PCT
Gso15g0732 15 6613907 6616734 Gso5g1377 5 37241987 37244724 PCT
Gso11g2539 11 41442083 41444966 Gso5g1377 5 37241987 37244724 PCT