Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1358 ATGGATCAGGCAAAAAGCAAAGGCAGTGGTGAGATTTTGGATCATGTCGATGAAAGGGTGGATGAGGATTTTAACCAATTGGTTGAAGGAAATGCAATTGATGCAGGAGGTGGACATAGCTTGGGTGAAGGAGTTAATGTAAGTGGGGAAGATGGGACTTCAGAAGAGATGTGCAATGATCTTCGATTGAATAGGGAGCTAAAGGAGGGGTCTCAAGAAGTTAATGATCAGAACATGGGTGACCCACAAGAAATTAATGATACATTGCATGGGGTTGATCAAGGAACTAGTTATAGTTCAAGAAATTTGGTTAGTTGGGAAGTACCCGAGACTTGTGTTGTAGTAGATCCTTCTACTCAGATTGAGTGTGTCAATGGAGATAATAGGAAATTGGAAGCAAAACCTAATGAATCAGGGTTGAACAAGGTGTCCATGAAAGTCACAAATGGGGTGTCTGAGACAGATAAAAATTCATGTGTGATTGATATAAACTGTCACAGCTGTGATGGGTTTAGTGAGAATTTGGAAGGTGAAATGATTTGTAGGATTTGCCATCTGGCCTCTGGGCAACCATTGGAAGCAGCAGATGTTGGCACTGCAAGTAGTGCTACTACTAATACAGATTTGATTCAGCTCGGTTGTGCATGTAAAGATGAGCTAGGGATTGTGCATAGTCATTGTGCAGAGGCATGGTTCAAGCTTAAAGGAAACAGGTTGTGTGAAATATGTGGTGAGACTGCAAAAAATGTTTCGGATGTTACGGATAATGGATTTATTGAAGAGTGGAATGATACTAGATTCATGGACAGTGATAATACCTCATCCAGAAGGTTTGGTGGATGCTGGCGCGGACAACCATTTTGTAACTTCTTAATGGCATGCCTGGTAATAGCTTTTGTTCTACCATGGTTCTTCAGGGTAAATATGTTCTAG 933 0.4116 MDQAKSKGSGEILDHVDERVDEDFNQLVEGNAIDAGGGHSLGEGVNVSGEDGTSEEMCNDLRLNRELKEGSQEVNDQNMGDPQEINDTLHGVDQGTSYSSRNLVSWEVPETCVVVDPSTQIECVNGDNRKLEAKPNESGLNKVSMKVTNGVSETDKNSCVIDINCHSCDGFSENLEGEMICRICHLASGQPLEAADVGTASSATTNTDLIQLGCACKDELGIVHSHCAEAWFKLKGNRLCEICGETAKNVSDVTDNGFIEEWNDTRFMDSDNTSSRRFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1358 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 310 - -
Gso5g1358 310 SMART ringv_2 180 244 IPR011016 GO:0008270
Gso5g1358 310 Pfam RING-variant domain 200 243 IPR011016 GO:0008270
Gso5g1358 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 248 IPR013083 -
Gso5g1358 310 MobiDBLite consensus disorder prediction 32 55 - -
Gso5g1358 310 PANTHER ZINC FINGER, RING-CH-TYPE 1 310 - -
Gso5g1358 310 SUPERFAMILY RING/U-box 178 246 - -
Gso5g1358 310 ProSiteProfiles Zinc finger RING-CH-type profile. 173 250 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1358 Gso-Chr5 37063171 37066408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1358 176 309 C3H Transcription Factor Family AT5G05830 38.849 6.25e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1358 - - gmx:100791129 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1358 5 37063171 37066408 Gso8g0981 8 9061808 9065921 GST
Gso5g1358 5 37063171 37066408 Gso15g0720 15 6491928 6495608 PCT
Gso5g1358 5 37063171 37066408 Gso11g2556 11 41619730 41623464 PCT
Gso15g0720 15 6491928 6495608 Gso5g1358 5 37063171 37066408 PCT
Gso11g2556 11 41619730 41623464 Gso5g1358 5 37063171 37066408 PCT