Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1357 ATGTCAGATCACAACCACAAGATATCCAATTCCGCTGTCAATGGGAATGATTCTCTGAATGGTCACATCATATCCACTACAGTTGGAGGAAAAAATGGGAAGCCCAAACAGACTAAAAGTTACATGGCAGAATGCATTGTGGGGACTGGGTCATTTGGAATTGTCTTCCTGGCTAAATGCTTGGAAACTGGCGAGCCAGTGGCCATTAAGAAGGTTTTACTGGACAAAAGATATAAGAATCGTGAGCTACAGTTAATGCGCTTGATGGATCATCCAAATGTGATCTCTCTGAAGCATCGTTTCTTTTCCACTACAAGTGCAGATGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCAGAGTCTATGTATCGAGTCTCAAAGTTCTATAGTAATACTAATCAGAGCATGCCACTTATTTATGTAAAACTTTACATGCACCAGATTTTCAGGGGGCTGGCTTATATCCACACTGTTCCTGGAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGACCCTCTTACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTGGTCAAAGGTGAAGCTAATATATCACATATATGTTCACTTTTCTACCGGGCACCAGAACTTATGTTTGGTGCCACTGAGTATACTACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAGCTGCTTTTGGGCCAGCCCTTATTTCCTGGCGAAAATGCACTGGACCAGCTTGTTGAGATTATCAAGGTTCTTGGCACACCTGCTCAGGAGGAAGTTTCTTGTACGAATCCAACCTACAATGATTTCAAGTTTCCACAGATATTCCATGAAAAAATGCCTCCAGAAGCAATAGATCTTGCTTCCCGCCTTCTGCAGTATTCCCCTAGTCTTCGATGTACCGCACTAGAAGCATGTGCACACCCATTCTTTGATGAACTCCGTGAACCCAATGCTCACTTGCCAGATGGTCGTCCATTTCCCCCTCTATTCAACTTTAAACAAGAGTTATCTGGAGCATCTCCAGAGCTCATTGACAAGTTGATACCTGACCATGTGAAGCGGCAGATAGGGATACAACATGCCCATTTGACTGGATTTCTGGAACATGATGTTAAGCTCAGCAAAGTGTAA 1152 0.4253 MSDHNHKISNSAVNGNDSLNGHIISTTVGGKNGKPKQTKSYMAECIVGTGSFGIVFLAKCLETGEPVAIKKVLLDKRYKNRELQLMRLMDHPNVISLKHRFFSTTSADELFLNLVMEYVPESMYRVSKFYSNTNQSMPLIYVKLYMHQIFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKICDFGSAKVLVKGEANISHICSLFYRAPELMFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENALDQLVEIIKVLGTPAQEEVSCTNPTYNDFKFPQIFHEKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNAHLPDGRPFPPLFNFKQELSGASPELIDKLIPDHVKRQIGIQHAHLTGFLEHDVKLSKV* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1357 383 PANTHER SHAGGY-RELATED PROTEIN KINASE ETA 5 367 - -
Gso5g1357 383 ProSitePatterns Protein kinases ATP-binding region signature. 47 71 IPR017441 GO:0005524
Gso5g1357 383 CDD STKc_GSK3 36 320 IPR039192 -
Gso5g1357 383 SUPERFAMILY Protein kinase-like (PK-like) 36 341 IPR011009 -
Gso5g1357 383 Gene3D Phosphorylase Kinase; domain 1 26 120 - -
Gso5g1357 383 ProSiteProfiles Protein kinase domain profile. 41 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1357 383 Gene3D Transferase(Phosphotransferase) domain 1 121 360 - -
Gso5g1357 383 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 5 367 - -
Gso5g1357 383 SMART serkin_6 41 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1357 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Gso5g1357 383 Pfam Protein kinase domain 45 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1357 Gso-Chr5 37051018 37055329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1357 47 325 Core Cell Cycle Gene Families AT1G76540 34.694 4.07e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Gso5g1357 Pkinase 8.5e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1357 K14502 - gmx:100810237 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1357 5 37051018 37055329 Gso8g0980 8 9051102 9055612 GST
Gso5g1357 5 37051018 37055329 Gso11g2558 11 41636509 41640871 PCT
Gso15g0719 15 6474381 6478832 Gso5g1357 5 37051018 37055329 PCT