Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1356 ATGAAGCCCCTTTTTTGCTTATTCTTGATTCTTGTGTCGCTATTTTCTCTGGTGGAATCTTCATGCAACAACATCAGTGAAGAGCACGACTTGTTGTCAAAGGCTTTCAAATCAGTCTCTGGCTTCAACGCTTCCTCCTCCTCGTTCCAAACCAACAACTGTTTCCAAACTCACATCATCACCAGAATAGTGCTTCCATCCCAAAACCTCAGTGGAACAATCTCATGGGGTTACCTGAGGAACATGTCCAAGTTGCAGGTTATCGATCTCTCTGGCAATGCCTTACAAGGTCACGTGCCATGCTGGTTTTGGTCGAGTTCATCCTTATTGGAAATAAACCTCTCTAGAAACAGGTTCGGAGGGAGCATCCTTAAACCCACAGCAGAAAACACCTCGTTTTCGTTTTCATCCATTAAAACACTCAACCTCTCCCACAACAGGTTTACTAATTCAATCCAACTTTCTGTTTTCCGAAACCTTAAGATCCTCGACCTTTCCCACAACAACCTGGTCACACTTCCTTCCGGGTTTCAAAACCTCACCAAACTACAACACCTTGACCTCTCGAGCTGCAATCTTCAAACCAACATAAAAGCCATTTCCTCTCTTGACTCCCTTAACCACTTGGACTTATCAAACAACAACTTCACCGGTAATTTCCCTTCTGATTTCCCTCCACTCACCACCCTCAAATTCCTCAACATCTCGTTCAACAACTTCACCTCATCAATTAGCGTAAACAGGCTCACTAGATTCGGTAAATCGGCTTTCGTCCACGCTGGCAGCAACTTCACCTACGACAGTACGAAAAACTCAACACAAGAAGAAGCCATCACTCACAAGCGAAAGTTCAAAACGCTGATTGCTGCAGCGTCATCAGCAATTGTCCTAATTCTCTTGTCCATATGGGCACTCCGCATTGTGATTCAGAAGAGGAAGCAGAGCGCCAAGAGGAACAAGTGGGCGATCTCGATGCCGGTCCCACAAGGGATGACGATGACGATGATAATGAAATCAGGGCCGTTCGCGTTCGAGACCGAATCAGGGTCAACGTGGGTGGCTGACCTGAAGGAACCGTCTTCGGCGCCGGTAGTGATGTTCGAGAAGCCGTTGATTAATCTGAGCTTCAAGGATCTCATTGTTGCCACGTCACACTTCGGGAAGGACTCGCTGCTGGCGGAGGGAAGGTGTGGGCCCGTGTACAGAGCCGTGCTGCCCGGGGAGCTCCACGTGGCAATCAAGGTCCTGGAACACGCCAGAGACGTTGATCATGATGACTCCGTGGCCACCTATGTTGACCTCGCAAGGCTCAAGCACCCCAACTTGCTGCCCCTCTCCGGTTACTGCATTGCAGGTAAGGAGAAACTGGTGCTGTACGAATACATGGGAAACGGAGACCTAGGAAGGTGGCTACACGAGCTTCCAACTGGAGACACCAACGTGGAGGACTGGACAGGCGACACGTGGGAGATTCAAAACGGCGTCGTCGACGATGGATCCCCAGAAAAGATGGGGTGGCTCACACGACACCGTATCGCAGTGGGCATAGCGCGTGGCCTCGCGTATCTTCACCACGCGCGTTCCAAGCCCGTGGTGCACGGCCACCTCGTCACCTCTAACATTCTCCTCGCCGACGACTTCGAGCCTCGGATCGCCGATTTCGGGTTGCGATCCGACCCGAACCCGAGTTCTGGCACTGAGGACGACGTGTACTGTTTCGGGGCGGTGCTGGTGGAGCTCCTGACGGGGAGGGAGAGCACGGCGGAGGCGGTGGCGGCGGCGCGGAAGGCGGTGAGGGAGGGGCACGGCGTTAGGGTTTTGGACGAGAGGCTCCGACTCGGGGGTGACTCGGTGGTACTGAGTCAGATGGTGGAGACTCTCCGAGTCGCGTTTTTGTGTACGGCGGAGAGCCCTTCGAAGAGGCCCACAATGCAACAGGTTTTGGGTATGCTCAAAGACATTGGACCTCATCACCACCACCAAATCAACTCGTCCTGA 1998 0.5235 MKPLFCLFLILVSLFSLVESSCNNISEEHDLLSKAFKSVSGFNASSSSFQTNNCFQTHIITRIVLPSQNLSGTISWGYLRNMSKLQVIDLSGNALQGHVPCWFWSSSSLLEINLSRNRFGGSILKPTAENTSFSFSSIKTLNLSHNRFTNSIQLSVFRNLKILDLSHNNLVTLPSGFQNLTKLQHLDLSSCNLQTNIKAISSLDSLNHLDLSNNNFTGNFPSDFPPLTTLKFLNISFNNFTSSISVNRLTRFGKSAFVHAGSNFTYDSTKNSTQEEAITHKRKFKTLIAAASSAIVLILLSIWALRIVIQKRKQSAKRNKWAISMPVPQGMTMTMIMKSGPFAFETESGSTWVADLKEPSSAPVVMFEKPLINLSFKDLIVATSHFGKDSLLAEGRCGPVYRAVLPGELHVAIKVLEHARDVDHDDSVATYVDLARLKHPNLLPLSGYCIAGKEKLVLYEYMGNGDLGRWLHELPTGDTNVEDWTGDTWEIQNGVVDDGSPEKMGWLTRHRIAVGIARGLAYLHHARSKPVVHGHLVTSNILLADDFEPRIADFGLRSDPNPSSGTEDDVYCFGAVLVELLTGRESTAEAVAAARKAVREGHGVRVLDERLRLGGDSVVLSQMVETLRVAFLCTAESPSKRPTMQQVLGMLKDIGPHHHHQINSS* 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1356 665 Gene3D Phosphorylase Kinase; domain 1 346 461 - -
Gso5g1356 665 SMART LRR_typ_2 157 179 IPR003591 -
Gso5g1356 665 SMART LRR_typ_2 203 231 IPR003591 -
Gso5g1356 665 SMART LRR_typ_2 82 105 IPR003591 -
Gso5g1356 665 Pfam Leucine rich repeat 65 119 IPR001611 GO:0005515
Gso5g1356 665 Pfam Leucine rich repeat 137 193 IPR001611 GO:0005515
Gso5g1356 665 Gene3D Ribonuclease Inhibitor 132 293 IPR032675 -
Gso5g1356 665 SUPERFAMILY Protein kinase-like (PK-like) 363 655 IPR011009 -
Gso5g1356 665 Gene3D Ribonuclease Inhibitor 22 131 IPR032675 -
Gso5g1356 665 ProSiteProfiles Leucine-rich repeat profile. 159 181 IPR001611 GO:0005515
Gso5g1356 665 Gene3D Transferase(Phosphotransferase) domain 1 565 662 - -
Gso5g1356 665 Pfam Protein tyrosine and serine/threonine kinase 390 559 IPR001245 GO:0004672|GO:0006468
Gso5g1356 665 SUPERFAMILY L domain-like 68 249 - -
Gso5g1356 665 ProSiteProfiles Protein kinase domain profile. 386 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1356 665 Gene3D Transferase(Phosphotransferase) domain 1 462 564 - -
Gso5g1356 665 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 272 659 - -
Gso5g1356 665 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 4 269 - -
Gso5g1356 665 PANTHER KINASE, PUTATIVE-RELATED 272 659 - -
Gso5g1356 665 PANTHER KINASE, PUTATIVE-RELATED 4 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1356 Gso-Chr5 37043251 37046498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1356 59 654 Receptor kinase-like Gene Family AT5G07280 30.938 8.24e-74 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Gso5g1356 PK_Tyr_Ser-Thr 2.8e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1356 - - gmx:100809704 1255.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1356 5 37043251 37046498 Gso8g0978 8 9030850 9036130 GST
Gso5g1356 5 37043251 37046498 Gso15g0717 15 6455733 6458909 PCT
Gso5g1356 5 37043251 37046498 Gso11g2560 11 41653213 41656389 PCT
Gso15g0717 15 6455733 6458909 Gso5g1356 5 37043251 37046498 PCT
Gso11g2560 11 41653213 41656389 Gso5g1356 5 37043251 37046498 PCT