Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1353 ATGTCAGATGAATATGAGAGGAGTGAACATGCTGATGATGACTCTTCAATGGGATCATCCCAGAAATGCTCATCCTTTGATTTGAATGAAGAAGCTAGTAGCAAAGATAACAATGACAACGATGATAAGGGATTCGAGGAAGCAAGGGAAGAAGGTACTTCAACTAATAAAAGTAGCAGCATGACAAAGGAAGGAAGTAATGAACGGAGAGGTGGCGTGAGACAATATGTTAGATCAAAAATGCCTCGGCTTCGGTGGACACCTGAACTTCATCTATCCTTTGTGCATGCTGTTGAAAGGCTTGGAGGTCAAGAAAGAGCAACACCCAAATTGGTGCTTCAGCTAATGAATGTGAGAGGCCTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGAAGCAAGAAACTAGACGAGGCTGGGCAAGTATTAGGTCAAACATACAAATCAACCCATGAACTTGGTCGTATTTCTCATGTAGCCCATCAGTCCATGAATCCTCGTCAACATTTTAAGATGGGAAATGGAGGAATTATTCTAGCAAGTGATTACAACGACCACAGTTATTTCCATGGTCTCATGCATCCCTGCTCCCTATCACATTCACATACAAAAGCCATCGATTCAAGGCGCCAACAATGGTACTTCAATAATCATCAACCTTTTAGAAGACCAAGTTACTTTAGCAACGAAGTTGTCTCCTCAACTGCCTTACAAACGCAAGGAAGATCATTATCTTCAAACCAAATTAACCTAATGGATGCCACCAGCATTGCACCCATGAGACCAAGCCAGTTTCTTGAAGAGAAAAAGTGGCCTCCCTTAGATATTATGAACAACCATCACTGGAAGAAAAGGTTGCCTGCCAATATTACTTCTAATGCTGTGTCACAACCTGTTGTACATCAATTTGGCACCACTGCAGCATCTCTGCTTAGACCAAGTGAGTTGAACTTTGGAAACAACACAAGAATCAAGGAGCATCTATCAAACTCCGACGAGCATCGCAACTATTCCAACAGTTTCAAGCTAGAATTTGAGCCTCCATTTCGGATTAAGTCGAATCAAGAAAAATTGCAGAAAGAGAACCAATGGGCGCCTGATTTGCGACTGAGTTTAAGTCAGAGAGATGGCAACAATGATGGCAAGACTGATCATTGCAGAGAAACCCAAGAAATCAACACGAAACTTTCACTTTCATAG 1206 0.4196 MSDEYERSEHADDDSSMGSSQKCSSFDLNEEASSKDNNDNDDKGFEEAREEGTSTNKSSSMTKEGSNERRGGVRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLGQTYKSTHELGRISHVAHQSMNPRQHFKMGNGGIILASDYNDHSYFHGLMHPCSLSHSHTKAIDSRRQQWYFNNHQPFRRPSYFSNEVVSSTALQTQGRSLSSNQINLMDATSIAPMRPSQFLEEKKWPPLDIMNNHHWKKRLPANITSNAVSQPVVHQFGTTAASLLRPSELNFGNNTRIKEHLSNSDEHRNYSNSFKLEFEPPFRIKSNQEKLQKENQWAPDLRLSLSQRDGNNDGKTDHCRETQEINTKLSLS* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1353 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 138 IPR017930 -
Gso5g1353 401 MobiDBLite consensus disorder prediction 32 53 - -
Gso5g1353 401 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 401 IPR044848 GO:0003700
Gso5g1353 401 MobiDBLite consensus disorder prediction 17 31 - -
Gso5g1353 401 MobiDBLite consensus disorder prediction 359 401 - -
Gso5g1353 401 MobiDBLite consensus disorder prediction 1 16 - -
Gso5g1353 401 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 401 - -
Gso5g1353 401 Gene3D - 81 138 - -
Gso5g1353 401 Pfam Myb-like DNA-binding domain 84 134 IPR001005 -
Gso5g1353 401 MobiDBLite consensus disorder prediction 360 379 - -
Gso5g1353 401 SUPERFAMILY Homeodomain-like 80 136 IPR009057 -
Gso5g1353 401 MobiDBLite consensus disorder prediction 1 76 - -
Gso5g1353 401 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 82 137 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1353 Gso-Chr5 37023300 37029554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1353 49 141 G2-like Transcription Factor Family AT2G42660 64.516 4.70e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso5g1353 Myb_DNA-binding 2.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1353 - - gmx:100808625 809.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1353 5 37023300 37029554 Gso8g0975 8 9010291 9016225 GST
Gso5g1353 5 37023300 37029554 Gso15g0712 15 6388131 6392829 PCT
Gso5g1353 5 37023300 37029554 Gso11g2565 11 41714250 41719151 PCT
Gso15g0712 15 6388131 6392829 Gso5g1353 5 37023300 37029554 PCT
Gso11g2565 11 41714250 41719151 Gso5g1353 5 37023300 37029554 PCT