Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1352 ATGGAAAGCATATGGGGGCCATTTGGATTATGGCTCCGAATTTATGTTGGATTGATTTCTCTGTGGGGAACTCGACAGTGTTGGTCTCTGAACGATGAAGGATTAACCTTGTTGGAATTTCGGGGAAGAATAACTTCTGATCCTTTTGCTGCTCTGGCAAATTGGAATCCAAACGATTGCAACCCTTGCAAATGGCTGGGTGTACGTTGTGTTGATAGTCAAGTGCAAACGCTGGTCCTACCTGATCTATCTTTGGAAGGGACATTGGCTCCTGAGCTTGGGAAACTTCGTCATCTAAAATCCCTTGTACTATACAAGAACAGTTTTTCTGGTACCATTCCCAAAGAACTTGGAGGTCTAGACAAGCTGGAGTTATTGGATTTAAGGGGGAATGACTTGACTGGATGTATCCCAGCAGAAATTGTCAGGGTGTTGTTGTCAAAACATTTGTTGGTTTGTGACAATAAATTTGAAGGCAGTGATTCTCAAGAGCTCAGATTGCCCTCTCATAACAATCATTTAACTCCTTTGGCAACTTTATCTCATGGCAAGAATAGAAAGTTTGCACACCGTATACAACAACAAGAACAACATGGTGAAAAAAGTATGTGCCATAAAAATTTCAAGCAATGGAACATGGAAGATTCATTTGTTATTCCACTTAAGGGAGCACTCAAAAATTACCTCAAAGCTGTCATTGCTGTGGCACTGCCACTGTTCAAGCTAGGAAAGGCTACTCCTCATGCCTATGAAGAGAAATACTGTAAAAATCTGACTAGCTCTGATGAATCAGATTTTGGCCATGATGAGTCAGAGTTTGGCCAGAATGTACCAAATATAATCAATTCAGTACGACGTAAGTTGTTTGATCAGTCCAGTAACCTTGCAGCTGCACCTTTCAGTGGTGGGCCTACTATAGAGATCAGTTCTGTTCCAATTACCCAGAGCAGTGGAGCTTTCCCAGCTGTGCCAGACACCAATAAGAAACAAAATCAGTCACCTGCACCATTGCCTTCATCTTCTAATTCTCCACCTGTGAATCAAGCAAGTCAACAAAATTCACCTAATGGTGCATCTGGAAAATTATGGAAGTATATTATTATAATCGCAGGTGTTGCTGTCTTGGTCATTGTTTTTGTGATCATGCTTTGCATTTGGCGTAAACGAGCAGCAAAAGTAATAAAGCCTTGGAAGACAGGAATAAGTGGACAGTTGCAGAAAGCATTTATAACAGGGGTCCCCAAATTGAATCAGGGAGAGCTGGAAACAGCCTGTGAAGATTTCAGCAATATTATTAATAGTTTTGATGAGTGCACTATATACAAAGGAACACTATCCAGTGGAGTCGAGATTGCTGTTGATTCAACTATTGTTACTTCTGCCCATGATTGGTCAAAGAACATGGAGACAGCCTATCGCAAAAAGATTGCTGCTTTGTCCCGTGTTAACCATAAGAACTTTACCAACCTTATTGGGTACTGTGACGAAGAAGAACCATTCACAAGGATGATGGTGTTTGAGTATGCTCCAAATGGAAACTTATTTGAGCATCTGCATGTTGAGGAAGTTGAACCTCTTGACTGGAGCGCAAGGATGAGGGTTATTATGGGCACGGCTTATTGTCTTCAGTATATGCACCATGATCTAAATCCACCAGTAGCTCATTCCAACCTCAATTCAATTGCTATATTATTAACAGATGACTTTGCTGCTAAGATATCAGAGATCTCTTTTGGCAAGCATGCAAAAACCAACACAACTGGAGATGAATCACAGAAATCTTCTGAGTTGCCACCACAGGCTGATCCTGAAACTGATGTCTATAACTTTGGAGTATTGTTGCTTGAAATCATTTCTGGGAAACTACCTTACTCTGAAGAACAAGGCCACCTTGCCAACTGGGCTGCTGAGCACTTGAATGATAAGCGAAGCATCGGCTATCTGATCGATCCCACGCTGCAGTCCTTCAAAGAGGAAGAACTTGAGGTCATCTGTGAGGTGATCAAAGATTGTCTTCAATCTGATCCAAGGTTAAGACCTACAATGAAGGACATAACTCCCAGATTGAGGGAAGTTCTTCATATATCACCCGAGCAAGCTGTCCCAAGACTCTCTCCACTCTGGTGGGCTGAACTGGAGATCTTATCAATGGAGGCCACTTAA 2163 0.4184 MESIWGPFGLWLRIYVGLISLWGTRQCWSLNDEGLTLLEFRGRITSDPFAALANWNPNDCNPCKWLGVRCVDSQVQTLVLPDLSLEGTLAPELGKLRHLKSLVLYKNSFSGTIPKELGGLDKLELLDLRGNDLTGCIPAEIVRVLLSKHLLVCDNKFEGSDSQELRLPSHNNHLTPLATLSHGKNRKFAHRIQQQEQHGEKSMCHKNFKQWNMEDSFVIPLKGALKNYLKAVIAVALPLFKLGKATPHAYEEKYCKNLTSSDESDFGHDESEFGQNVPNIINSVRRKLFDQSSNLAAAPFSGGPTIEISSVPITQSSGAFPAVPDTNKKQNQSPAPLPSSSNSPPVNQASQQNSPNGASGKLWKYIIIIAGVAVLVIVFVIMLCIWRKRAAKVIKPWKTGISGQLQKAFITGVPKLNQGELETACEDFSNIINSFDECTIYKGTLSSGVEIAVDSTIVTSAHDWSKNMETAYRKKIAALSRVNHKNFTNLIGYCDEEEPFTRMMVFEYAPNGNLFEHLHVEEVEPLDWSARMRVIMGTAYCLQYMHHDLNPPVAHSNLNSIAILLTDDFAAKISEISFGKHAKTNTTGDESQKSSELPPQADPETDVYNFGVLLLEIISGKLPYSEEQGHLANWAAEHLNDKRSIGYLIDPTLQSFKEEELEVICEVIKDCLQSDPRLRPTMKDITPRLREVLHISPEQAVPRLSPLWWAELEILSMEAT* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1352 720 Gene3D Phosphorylase Kinase; domain 1 397 508 - -
Gso5g1352 720 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Gso5g1352 720 ProSiteProfiles Protein kinase domain profile. 410 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1352 720 MobiDBLite consensus disorder prediction 319 356 - -
Gso5g1352 720 Gene3D Ribonuclease Inhibitor 32 208 IPR032675 -
Gso5g1352 720 PANTHER PROTEIN MALE DISCOVERER 2 1 720 - -
Gso5g1352 720 MobiDBLite consensus disorder prediction 582 599 - -
Gso5g1352 720 PANTHER LRR RECEPTOR-LIKE KINASE 1 720 - -
Gso5g1352 720 SUPERFAMILY Protein kinase-like (PK-like) 417 688 IPR011009 -
Gso5g1352 720 Gene3D Transferase(Phosphotransferase) domain 1 509 701 - -
Gso5g1352 720 MobiDBLite consensus disorder prediction 582 603 - -
Gso5g1352 720 SUPERFAMILY L domain-like 29 185 - -
Gso5g1352 720 Pfam Protein tyrosine and serine/threonine kinase 439 688 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1352 Gso-Chr5 36999811 37006703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1352 85 692 Receptor kinase-like Gene Family AT5G56040 25.822 4.05e-44 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Gso5g1352 PK_Tyr_Ser-Thr 4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1352 - - gmx:100808098 1414.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1352 5 36999811 37006703 Gso8g0974 8 8985742 8992237 GST