Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1351 ATGGCAGAGGTGGCGCCGCCGAAGAAGGAAAACCCGAACCTTCTCCTGGGGCGGTTCGAGCTCGGGAAGCTCCTCGGGCACGGAACCTTCGCGAAGGTCCACCACGCGCGCAACATCAAAACCGGAGAAGGAGTCGCCATCAAGATCATCAACAAGGAGAAAATCCTAAAGGGGGGTTTGGTCTCCCACATAAAGCGCGAGATCTCCATTCTCCGGCGCGTGCGCCACCCCAACATCGTGCAACTCTTCGAAGTGATGGCCACCAAGACCAAGATCTACTTCGTCATGGAGTACGTGCGTGGCGGCGAACTCTTCAACAAGGTCGCAAAGGGAAGATTAAAAGAAGAAGTTGCGAGAAATTACTTTCAGCAGTTAGTTTCCGCGGTGGAGTTTTGCCACGCGCGCGGCGTGTTCCACAGGGACCTGAAGCCCGAGAACCTGTTGCTGGACGAGGATGGGAACCTTAAAGTCTCCGACTTTGGTCTCAGTGCCGTGTCGGATCAGATAAGGCAGGACGGGCTGTTCCACACGTTTTGTGGGACACCTGCGTATGTTGCTCCTGAGGTCTTGTCGCGGAAAGGCTACGATGGTGCAAAGGTTGATATTTGGTCTTGTGGGGTTGTTTTGTTTGTTCTGATGGCCGGCTATTTGCCCTTCAATGACCGTAACGTTATGGCTATGTATAAGAAGATTTACAAGGGTGAGTTTCGGTGTCCCAGGTGGTTTTCTTCTGAACTTACAAGACTTCTCTCTAGGCTTCTTGATACTAACCCTCAGACAAGGATTTCTATTCCTGAAGTCATGGAGAATCGCTGGTTCAAGAAGGGTTTCAAGCAGATTAAGTTTTATGTGGAGGATGATAGAGTTTGTAGTTTTGACGAGAAACTGTTACTTCATCATGATGATGATTTGGCAACATCGGATTCTGAGGTTGAGATTAGGAGGAAGAATAGTAATGGTTCGTTGCCGAGGCCTGCGAGTTTGAATGCGTTTGACATCATATCGTTTTCTCAGGGCTTTGATCTATCAGGGTTGTTTGAGGAAAAGGGTGATGAGGCGAGGTTTGTGTCATCTGCTCCGGTGTCGAAGATTATATCAAAATTGGAGGAGGTTGCTCAGTTGGTTAGTTTCAGTGTGAGGAAGAAAGATTGCAGGGTGAGCTTGGAGGGGTGTAGAGAAGGTGTGAAGGGGCCTTTGACTATTGCTGCTGAGGTTTTTGAGTTGACACCTTCCTTGGTGGTGGTGGAGGTCAAGAAAAAGGGAGGGGATAAGGCCGAGTATGAGAAGTTTTGTAACTCTGAGTTGAGACCCGCGTTGGAGAATTTAGGGATGGAGGAATCTGCTTCTTCTTCTTCTTCTTGTCATCAATCTACACACACTCAATCTGAATTCCAACAACATCGAACACTTTCTGACTCTGCCCTTAACAGACATTCAGATAATGAATGTTTGTTCGAACGAGAGTTAGGTCTAGCAGATGAGACTAGTATCTCACAACATGGTGAATCAAAGTTCGAATTTCAACAGGAAAATATGGCGATGTTTACTATCTGA 1554 0.4775 MAEVAPPKKENPNLLLGRFELGKLLGHGTFAKVHHARNIKTGEGVAIKIINKEKILKGGLVSHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARNYFQQLVSAVEFCHARGVFHRDLKPENLLLDEDGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLSRKGYDGAKVDIWSCGVVLFVLMAGYLPFNDRNVMAMYKKIYKGEFRCPRWFSSELTRLLSRLLDTNPQTRISIPEVMENRWFKKGFKQIKFYVEDDRVCSFDEKLLLHHDDDLATSDSEVEIRRKNSNGSLPRPASLNAFDIISFSQGFDLSGLFEEKGDEARFVSSAPVSKIISKLEEVAQLVSFSVRKKDCRVSLEGCREGVKGPLTIAAEVFELTPSLVVVEVKKKGGDKAEYEKFCNSELRPALENLGMEESASSSSSCHQSTHTQSEFQQHRTLSDSALNRHSDNECLFERELGLADETSISQHGESKFEFQQENMAMFTI* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1351 517 ProSiteProfiles NAF domain profile. 323 347 IPR018451 GO:0007165
Gso5g1351 517 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Gso5g1351 517 CDD STKc_SnRK3 18 272 - -
Gso5g1351 517 Gene3D Transferase(Phosphotransferase) domain 1 9 322 - -
Gso5g1351 517 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 13 452 - -
Gso5g1351 517 SUPERFAMILY Protein kinase-like (PK-like) 15 274 IPR011009 -
Gso5g1351 517 SMART serkin_6 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1351 517 Pfam Protein kinase domain 20 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1351 517 Gene3D Kinase associated domain 1, KA1 325 443 - -
Gso5g1351 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Gso5g1351 517 CDD CIPK_C 329 439 - -
Gso5g1351 517 Pfam NAF domain 325 381 IPR004041 GO:0007165
Gso5g1351 517 ProSiteProfiles Protein kinase domain profile. 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso5g1351 517 MobiDBLite consensus disorder prediction 444 471 - -
Gso5g1351 517 PANTHER - 13 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1351 Gso-Chr5 36992389 36994386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1351 6 446 CBL-interacting serine-threonine protein kinases AT4G18700 78.795 0.0 742
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gso5g1351 Pkinase 1.2e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1351 - - gmx:100807567 1000.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g1351 5 36992389 36994386 Gso8g0973 8 8978683 8980734 GST