Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso5g1340 ATGGAGTATCAAAACCAAAGGGCCAAGGAGGGTAGATTCTGTGAGAAACTCAAGATCAAGAATAGGCCAAAGTTTGTAGGAGTGAGACAAAGGGCTTCAGGGAAATGGGCAGCAGAGATCAAAGACACATCAAAGAAGATTAGGCTTTGGCTTGGAACTTATCAAACTGCTGAGGAAGCTGCTCGAGCTTATGATGAAGCTGCATGCCTCCTTCGAGGTTCAAACACTCGCACCAATTTTTCTACTCAAGGGTGTGGCGTTGCTACAAATTCTCCTATATCTCTCAAACTCAGAAACCTCCTTGATCGTAAAGCCATGTCAAATCAAAGTCAAAGTCAAAGTCAAATTCAAAGGCAATCCTCTATGATAAGTTCCACTTTCCAAGGTGCTGATACTTCAGCTAGTCCAAATGTTAGTGCCATCAATAAGATCATGGTTATGGAAAACTACTCTGCTTGTAGTAGTGAAGGTAAGTCTTTGTTTTTGGTTCAGAACCACCAAGTCTGTGATAACCCGTATGGACTAGATATGAATATGATCAACTGTTCAACGGGTATCACACCAAATACATCGCAGTTTGATTATTCTTGGCCATTAGCCCAACAAAGGATTAACGAATTGCCAATATCAAAAGATGATTTTGGTTTGAATGCAGAAAGGCAATTGTCAGGATATGCCACCAATGAGTGCCATGAGGAGGATACGTATGCATATGATGTCAATTATCCTCTCTCCCACTTTTTCTGCTTCACTTGA 756 0.4114 MEYQNQRAKEGRFCEKLKIKNRPKFVGVRQRASGKWAAEIKDTSKKIRLWLGTYQTAEEAARAYDEAACLLRGSNTRTNFSTQGCGVATNSPISLKLRNLLDRKAMSNQSQSQSQIQRQSSMISSTFQGADTSASPNVSAINKIMVMENYSACSSEGKSLFLVQNHQVCDNPYGLDMNMINCSTGITPNTSQFDYSWPLAQQRINELPISKDDFGLNAERQLSGYATNECHEEDTYAYDVNYPLSHFFCFT* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso5g1340 251 Gene3D AP2/ERF domain 24 83 IPR036955 GO:0003700|GO:0006355
Gso5g1340 251 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-11 18 123 - -
Gso5g1340 251 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-11 143 237 - -
Gso5g1340 251 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Gso5g1340 251 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Gso5g1340 251 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Gso5g1340 251 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Gso5g1340 251 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 18 123 - -
Gso5g1340 251 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 143 237 - -
Gso5g1340 251 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
Gso5g1340 251 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Gso5g1340 251 MobiDBLite consensus disorder prediction 106 135 - -
Gso5g1340 251 Pfam AP2 domain 23 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso5g1340 Gso-Chr5 36890040 36891382 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso5g1340 1 101 AP2-EREBP Transcription Factor Family AT5G19790 65.347 2.37e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso5g1340 AP2 3.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso5g1340 K09286 - gmx:100803832 482.256